Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0992
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25) 232 3e-61
SB_41576| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0) 50 3e-06
SB_41291| Best HMM Match : Piwi (HMM E-Value=0) 32 0.57
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 29 4.0
SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11) 29 5.3
SB_23498| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011) 28 9.3
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011) 28 9.3
SB_18784| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
Length = 440
Score = 232 bits (567), Expect = 3e-61
Identities = 108/160 (67%), Positives = 129/160 (80%)
Frame = +1
Query: 127 VAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICF 306
+A TVK++L ESL++ILSPKRRVDILRD + K++G+PYV+ FCGVNGVGKSTNLAK+CF
Sbjct: 156 IASTVKSSLEESLIQILSPKRRVDILRDAMENKRKGKPYVVTFCGVNGVGKSTNLAKVCF 215
Query: 307 WLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAG 486
WL+EN+ V+IAACDTFRAGAVEQLRTH R V LYEKGYGKDAA
Sbjct: 216 WLLENNFRVMIAACDTFRAGAVEQLRTHVRHLNALHPPAHANGPPSVLLYEKGYGKDAAS 275
Query: 487 IAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIR 606
IAM+AI +A + + DVVL+DTAGRMQDNEPLMRAL+KLI+
Sbjct: 276 IAMDAINFAREQRVDVVLVDTAGRMQDNEPLMRALSKLIK 315
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
+N+PD VLFVG ALV NEAVDQL KFNQALAD+SS P +ID
Sbjct: 316 LNDPDLVLFVGEALVGNEAVDQLKKFNQALADHSSQDRPRLID 358
>SB_41576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +1
Query: 4 PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTF 120
PVL+K+++HL KNVAADI+ KLCDSVA KLEGKV+GTF
Sbjct: 29 PVLEKMKEHLTSKNVAADISEKLCDSVATKLEGKVIGTF 67
>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
Length = 410
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/124 (23%), Positives = 55/124 (44%)
Frame = +1
Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+ +
Sbjct: 13 KGKKNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 67
Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
+ Y D IA E + + +++++DT+GR + E L
Sbjct: 68 --------TKARIPFYGSYTETDPVIIAQEGVEKFKEENFEIIIVDTSGRHKQEESLFEE 119
Query: 589 LAKL 600
+ ++
Sbjct: 120 MLQV 123
>SB_41291| Best HMM Match : Piwi (HMM E-Value=0)
Length = 598
Score = 31.9 bits (69), Expect = 0.57
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +1
Query: 67 KLCDSVAIKLEGKVLGTFDSVAKTVKATLTE 159
++C ++A+K+ GK+ GT +A +KAT+T+
Sbjct: 215 QVCSNIAMKINGKLGGTNHVIADRLKATITD 245
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 167 TRDSVRVAFTVLATLSKV-PSTFPSSLMATLSQSLLAMSAATFFPM 33
TRDSV V+ +LA +SKV T +S+ AMS PM
Sbjct: 815 TRDSVTVSTPILANVSKVGTGTHNKPKSCETGESMTAMSPGIHMPM 860
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345
P A G+NG GKS L ICF L ++LS + A+
Sbjct: 25 PLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
>SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)
Length = 314
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 490 AMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIR 606
A +++R+ S+ KT +++ RM++ E L + +LIR
Sbjct: 3 AEKSVRHGSNDKTQSIIVAMKSRMEERERLKPEIFQLIR 41
>SB_23498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 429 VARGRVQRVEVPRVRAQLLHGAGAERVARRYQHRQIVLDQPEADLR-QVRRFTDAVHPAE 253
VA+GR + P V LL G R + +HR V D + LR + R DA H
Sbjct: 304 VAKGRPCKHVWPEVHGHLLQGQPPPRAVQDLRHRDAVGDTVVSPLRSESCRAEDARHREA 363
Query: 252 R 250
R
Sbjct: 364 R 364
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 506 DTRLTLKPTSCSSTLRAECRTTSL*CGPSPSSFAVNEPDTVL 631
D+ L P + +ST ++ T L P P + AV E TVL
Sbjct: 1765 DSPTVLDPDTSASTESSKAPLTKLVSSPGPETTAVRETSTVL 1806
>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 37 GKNVAADIANKLCDSVAIKLEGKVLGTFDS--VAKTVKATLTESLVRILSPKRRVDI 201
G +VAAD+A KL D + G VL D +A + KA E+L R+L R +I
Sbjct: 517 GISVAADVAQKLVDDNFSDIPG-VLAVHDDIIIAGSDKAEHDEALSRVLLRARERNI 572
>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
Length = 323
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 81 CCHQTRGEGARYLRQCCQDGEGYPHRVPRADTVAEASRGHPAGLSARQAGGQALRH 248
CC + + A YL+ C E Y + ++ + ++ +P + + G+ LRH
Sbjct: 175 CCDRDTCDVAFYLKDTCYSVECYADELCQSVPIKKSKTFNPTVVYMNKRNGKRLRH 230
>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
Length = 353
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 81 CCHQTRGEGARYLRQCCQDGEGYPHRVPRADTVAEASRGHPAGLSARQAGGQALRH 248
CC + + A YL+ C E Y + ++ + ++ +P + + G+ LRH
Sbjct: 186 CCDRDTCDVAFYLKDTCYSVECYADELCQSVPIKKSKTFNPTVVYMNKRNGKRLRH 241
>SB_18784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 43 NVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRRVDILRDCLHA 222
+V D + +C + + L KV+ F ATL V++L+ R DI+++C++
Sbjct: 230 SVPKDEIDYICSNSGLYLWEKVMEQFSRKTNGQVATL----VKLLNELEREDIIQECIYK 285
Query: 223 KQEGR 237
+G+
Sbjct: 286 WLDGK 290
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,100,921
Number of Sequences: 59808
Number of extensions: 458762
Number of successful extensions: 1522
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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