Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0992
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for ... 283 5e-76
BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition part... 283 5e-76
BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition part... 283 5e-76
BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition part... 283 5e-76
CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein. 279 1e-74
X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein. 48 5e-05
U51920-1|AAC50994.1| 504|Homo sapiens signal recognition partic... 48 5e-05
BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition part... 48 5e-05
BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition part... 48 5e-05
AJ271448-1|CAB93534.2| 495|Homo sapiens protein phosphatase 4 r... 32 2.5
>X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for
docking protein (signal recognition particle receptor).
).
Length = 638
Score = 283 bits (694), Expect = 5e-76
Identities = 141/199 (70%), Positives = 158/199 (79%)
Frame = +1
Query: 7 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 186
VLDK+RDHLI KNVAADIA +LC+SVA KLEGKV+GTF +V TVK L ESLV+IL P+
Sbjct: 341 VLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQ 400
Query: 187 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 366
RRVD+LRD + A++ RPYV+ FCGVNGVGKSTNLAKI FWL+EN SVLIAACDTFRAG
Sbjct: 401 RRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAG 460
Query: 367 AVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 546
AVEQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+D
Sbjct: 461 AVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVD 520
Query: 547 TAGRMQDNEPLMRALAKLI 603
TAGRMQDN PLM ALAKLI
Sbjct: 521 TAGRMQDNAPLMTALAKLI 539
Score = 64.5 bits (150), Expect = 4e-10
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
VN PD VLFVG ALV NEAVDQLVKFN+ALAD+S P +ID
Sbjct: 541 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLID 583
>BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 283 bits (694), Expect = 5e-76
Identities = 141/199 (70%), Positives = 158/199 (79%)
Frame = +1
Query: 7 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 186
VLDK+RDHLI KNVAADIA +LC+SVA KLEGKV+GTF +V TVK L ESLV+IL P+
Sbjct: 341 VLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQ 400
Query: 187 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 366
RRVD+LRD + A++ RPYV+ FCGVNGVGKSTNLAKI FWL+EN SVLIAACDTFRAG
Sbjct: 401 RRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAG 460
Query: 367 AVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 546
AVEQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+D
Sbjct: 461 AVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVD 520
Query: 547 TAGRMQDNEPLMRALAKLI 603
TAGRMQDN PLM ALAKLI
Sbjct: 521 TAGRMQDNAPLMTALAKLI 539
Score = 64.5 bits (150), Expect = 4e-10
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
VN PD VLFVG ALV NEAVDQLVKFN+ALAD+S P +ID
Sbjct: 541 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLID 583
>BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 283 bits (694), Expect = 5e-76
Identities = 141/199 (70%), Positives = 158/199 (79%)
Frame = +1
Query: 7 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 186
VLDK+RDHLI KNVAADIA +LC+SVA KLEGKV+GTF +V TVK L ESLV+IL P+
Sbjct: 341 VLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQ 400
Query: 187 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 366
RRVD+LRD + A++ RPYV+ FCGVNGVGKSTNLAKI FWL+EN SVLIAACDTFRAG
Sbjct: 401 RRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAG 460
Query: 367 AVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 546
AVEQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+D
Sbjct: 461 AVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVD 520
Query: 547 TAGRMQDNEPLMRALAKLI 603
TAGRMQDN PLM ALAKLI
Sbjct: 521 TAGRMQDNAPLMTALAKLI 539
Score = 64.5 bits (150), Expect = 4e-10
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
VN PD VLFVG ALV NEAVDQLVKFN+ALAD+S P +ID
Sbjct: 541 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLID 583
>BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 283 bits (694), Expect = 5e-76
Identities = 141/199 (70%), Positives = 158/199 (79%)
Frame = +1
Query: 7 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 186
VLDK+RDHLI KNVAADIA +LC+SVA KLEGKV+GTF +V TVK L ESLV+IL P+
Sbjct: 341 VLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQ 400
Query: 187 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 366
RRVD+LRD + A++ RPYV+ FCGVNGVGKSTNLAKI FWL+EN SVLIAACDTFRAG
Sbjct: 401 RRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAG 460
Query: 367 AVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 546
AVEQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+D
Sbjct: 461 AVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVD 520
Query: 547 TAGRMQDNEPLMRALAKLI 603
TAGRMQDN PLM ALAKLI
Sbjct: 521 TAGRMQDNAPLMTALAKLI 539
Score = 64.5 bits (150), Expect = 4e-10
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
VN PD VLFVG ALV NEAVDQLVKFN+ALAD+S P +ID
Sbjct: 541 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLID 583
>CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein.
Length = 638
Score = 279 bits (683), Expect = 1e-74
Identities = 140/199 (70%), Positives = 157/199 (78%)
Frame = +1
Query: 7 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 186
VLDK+RDHLI KNVAADIA +L +SVA KLEGKV+GTF +V TVK L ESLV+IL P+
Sbjct: 341 VLDKMRDHLIAKNVAADIAVQLWESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQ 400
Query: 187 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 366
RRVD+LRD + A++ RPYV+ FCGVNGVGKSTNLAKI FWL+EN SVLIAACDTFRAG
Sbjct: 401 RRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAG 460
Query: 367 AVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 546
AVEQLRTHTR MV L+EKGYGKDAAGIAMEAI +A + DVVL+D
Sbjct: 461 AVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVD 520
Query: 547 TAGRMQDNEPLMRALAKLI 603
TAGRMQDN PLM ALAKLI
Sbjct: 521 TAGRMQDNAPLMTALAKLI 539
Score = 64.5 bits (150), Expect = 4e-10
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
VN PD VLFVG ALV NEAVDQLVKFN+ALAD+S P +ID
Sbjct: 541 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLID 583
>X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein.
Length = 504
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/124 (22%), Positives = 55/124 (44%)
Frame = +1
Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+ +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152
Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
+ Y D IA E + + +++++DT+GR + + L
Sbjct: 153 --------TKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE 204
Query: 589 LAKL 600
+ ++
Sbjct: 205 MLQV 208
>U51920-1|AAC50994.1| 504|Homo sapiens signal recognition particle
protein.
Length = 504
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/124 (22%), Positives = 55/124 (44%)
Frame = +1
Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+ +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152
Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
+ Y D IA E + + +++++DT+GR + + L
Sbjct: 153 --------TKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE 204
Query: 589 LAKL 600
+ ++
Sbjct: 205 MLQV 208
>BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/124 (22%), Positives = 55/124 (44%)
Frame = +1
Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+ +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152
Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
+ Y D IA E + + +++++DT+GR + + L
Sbjct: 153 --------TKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE 204
Query: 589 LAKL 600
+ ++
Sbjct: 205 MLQV 208
>BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 47.6 bits (108), Expect = 5e-05
Identities = 28/124 (22%), Positives = 55/124 (44%)
Frame = +1
Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+ +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152
Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
+ Y D IA E + + +++++DT+GR + + L
Sbjct: 153 --------TKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE 204
Query: 589 LAKL 600
+ ++
Sbjct: 205 MLQV 208
>AJ271448-1|CAB93534.2| 495|Homo sapiens protein phosphatase 4
regulatory subunit 2 protein.
Length = 495
Score = 31.9 bits (69), Expect = 2.5
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 443 MCRA-WWRAGGCSALRCRVCVRSCSTA 366
MC+A WRAGG RC +C RSCS A
Sbjct: 1 MCQAPCWRAGGSGLGRCSLC-RSCSLA 26
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,216,343
Number of Sequences: 237096
Number of extensions: 2109652
Number of successful extensions: 6408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6408
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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