Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0992
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...   151   4e-37
AF047663-8|AAK84581.1|  114|Caenorhabditis elegans Hypothetical ...    61   9e-10
Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical p...    45   5e-05
Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical pr...    45   5e-05

>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score =  151 bits (367), Expect = 4e-37
 Identities = 71/113 (62%), Positives = 90/113 (79%)
 Frame = +1

Query: 4   PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183
           P+++K+R++LI KNVA++ A K+C SV  KLEGKV+  F  VA+ VK  + ESLV++L+P
Sbjct: 334 PLIEKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTP 393

Query: 184 KRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIA 342
           K RVDILRD + AK++GRPYV+ FCGVNGVGKSTNLAKI FWL EN   VLIA
Sbjct: 394 KHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIA 446


>AF047663-8|AAK84581.1|  114|Caenorhabditis elegans Hypothetical
           protein W09G12.5 protein.
          Length = 114

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
 Frame = +2

Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSS-XSIPHVID 736
           VNEPD VLFVG ALV NEAVDQLVKFN+ALA+++S    P +ID
Sbjct: 17  VNEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLID 60



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +1

Query: 559 MQDNEPLMRALAKLIR 606
           MQDNEPLMR LAKLIR
Sbjct: 1   MQDNEPLMRELAKLIR 16


>Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/124 (23%), Positives = 52/124 (41%)
 Frame = +1

Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
           +GR  V  F G+ G GK+T   K+ ++         +   DTFRAGA +QL+ +      
Sbjct: 98  KGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152

Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
                       +  Y      D   IA E +   +    +++++DT+GR +    L   
Sbjct: 153 --------TKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEE 204

Query: 589 LAKL 600
           + ++
Sbjct: 205 MLQV 208


>Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/124 (23%), Positives = 52/124 (41%)
 Frame = +1

Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408
           +GR  V  F G+ G GK+T   K+ ++         +   DTFRAGA +QL+ +      
Sbjct: 98  KGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152

Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588
                       +  Y      D   IA E +   +    +++++DT+GR +    L   
Sbjct: 153 --------TKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEE 204

Query: 589 LAKL 600
           + ++
Sbjct: 205 MLQV 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,293
Number of Sequences: 27780
Number of extensions: 309059
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)