BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0992 (750 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC199169-1|ABO33259.1| 450|Caenorhabditis elegans Hypothetical ... 151 4e-37 AF047663-8|AAK84581.1| 114|Caenorhabditis elegans Hypothetical ... 61 9e-10 Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical p... 45 5e-05 Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical pr... 45 5e-05 >AC199169-1|ABO33259.1| 450|Caenorhabditis elegans Hypothetical protein F38A1.8 protein. Length = 450 Score = 151 bits (367), Expect = 4e-37 Identities = 71/113 (62%), Positives = 90/113 (79%) Frame = +1 Query: 4 PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183 P+++K+R++LI KNVA++ A K+C SV KLEGKV+ F VA+ VK + ESLV++L+P Sbjct: 334 PLIEKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTP 393 Query: 184 KRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIA 342 K RVDILRD + AK++GRPYV+ FCGVNGVGKSTNLAKI FWL EN VLIA Sbjct: 394 KHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIA 446 >AF047663-8|AAK84581.1| 114|Caenorhabditis elegans Hypothetical protein W09G12.5 protein. Length = 114 Score = 60.9 bits (141), Expect = 9e-10 Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%) Frame = +2 Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSS-XSIPHVID 736 VNEPD VLFVG ALV NEAVDQLVKFN+ALA+++S P +ID Sbjct: 17 VNEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLID 60 Score = 33.5 bits (73), Expect = 0.16 Identities = 15/16 (93%), Positives = 15/16 (93%) Frame = +1 Query: 559 MQDNEPLMRALAKLIR 606 MQDNEPLMR LAKLIR Sbjct: 1 MQDNEPLMRELAKLIR 16 >Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical protein F21D5.7 protein. Length = 496 Score = 45.2 bits (102), Expect = 5e-05 Identities = 29/124 (23%), Positives = 52/124 (41%) Frame = +1 Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408 +GR V F G+ G GK+T K+ ++ + DTFRAGA +QL+ + Sbjct: 98 KGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152 Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588 + Y D IA E + + +++++DT+GR + L Sbjct: 153 --------TKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEE 204 Query: 589 LAKL 600 + ++ Sbjct: 205 MLQV 208 >Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical protein F21D5.7 protein. Length = 496 Score = 45.2 bits (102), Expect = 5e-05 Identities = 29/124 (23%), Positives = 52/124 (41%) Frame = +1 Query: 229 EGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXX 408 +GR V F G+ G GK+T K+ ++ + DTFRAGA +QL+ + Sbjct: 98 KGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNA----- 152 Query: 409 XXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRA 588 + Y D IA E + + +++++DT+GR + L Sbjct: 153 --------TKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEE 204 Query: 589 LAKL 600 + ++ Sbjct: 205 MLQV 208 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,328,293 Number of Sequences: 27780 Number of extensions: 309059 Number of successful extensions: 1041 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1041 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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