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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0992
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30600.1 68417.m04341 signal recognition particle receptor al...   223   1e-58
At2g45770.1 68415.m05693 signal recognition particle receptor pr...    62   3e-10
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot...    53   2e-07
At1g15310.1 68414.m01832 signal recognition particle 54 kDa prot...    51   7e-07
At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot...    46   3e-05
At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot...    37   0.012
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR...    31   0.82 
At2g29680.2 68415.m03608 cell division control protein CDC6, put...    30   1.9  
At2g29680.1 68415.m03607 cell division control protein CDC6, put...    30   1.9  
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T...    29   3.3  
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    29   3.3  
At2g20020.1 68415.m02340 expressed protein                             29   4.4  
At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ...    28   5.8  
At1g64300.1 68414.m07287 protein kinase family protein contains ...    28   5.8  
At1g61560.1 68414.m06935 seven transmembrane MLO family protein ...    28   5.8  
At3g63100.1 68416.m07087 glycine-rich protein                          28   7.6  

>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
           subunit family protein similar to Signal recognition
           particle receptor alpha subunit (SR-alpha) (Docking
           protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
           similar to Signal recognition particle receptor alpha
           subunit  (SR-alpha) (Docking protein alpha) (DP-alpha)
           (SP:P06625) [Canis familiaris};  contains Pfam PF04086:
           Signal recognition particle, alpha subunit, N-terminal;
           contains Pfam PF00448: SRP54-type protein, GTPase domain
          Length = 634

 Score =  223 bits (544), Expect = 1e-58
 Identities = 111/200 (55%), Positives = 147/200 (73%)
 Frame = +1

Query: 4   PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183
           P L  L++ L+ KNVA +IA KLC+SV   LEGK L +F  ++ TV+A + ++LVRIL+P
Sbjct: 350 PALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTP 409

Query: 184 KRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRA 363
           +R +DILRD   AK++ +PYV+ F GVNGVGKSTNLAK+ +WL ++ +SV++AACDTFR+
Sbjct: 410 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRS 469

Query: 364 GAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 543
           GAVEQLRTH R                + ++EKGY KD A +A EAI+ A+   +DVVL+
Sbjct: 470 GAVEQLRTHAR-------------RLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLV 516

Query: 544 DTAGRMQDNEPLMRALAKLI 603
           DTAGRMQDNEPLMRAL+KLI
Sbjct: 517 DTAGRMQDNEPLMRALSKLI 536



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +2

Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
           +N+PD VLFVG ALV N+AVDQL KFNQ L+D S+   P +ID
Sbjct: 538 LNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLID 580


>At2g45770.1 68415.m05693 signal recognition particle receptor
           protein, chloroplast (FTSY) similar to Cell division
           protein ftsY homolog (SP:O67066) {Aquifex aeolicus};
           contains Pfam PF00448: SRP54-type protein, GTPase domain
           contains TIGRFAM TIGR00064: signal recognition
           particle-docking protein FtsY contains Pfam PF02881:
           SRP54-type protein, helical bundle domain; identical to
           cDNA chloroplast FtsY homolog GI:4583547
          Length = 366

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 53/193 (27%), Positives = 84/193 (43%)
 Frame = +1

Query: 13  DKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRR 192
           D++ D L    + +D   K+   +  +L   ++         +K  L ES++ +L+ K  
Sbjct: 94  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153

Query: 193 VDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAV 372
              L+         +P V+   GVNG GK+T+L K+   L      VL+AA DTFRA A 
Sbjct: 154 KTELQLGFR-----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS 208

Query: 373 EQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTA 552
           +QL                       +  +G    AA +  +A++   +   DVVL DT+
Sbjct: 209 DQLEIWAERTGCE------------IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTS 256

Query: 553 GRMQDNEPLMRAL 591
           GR+  N  LM  L
Sbjct: 257 GRLHTNYSLMEEL 269


>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
           protein, chloroplast / 54 chloroplast protein / SRP54
           (FFC) identical to Swiss-Prot:P37107 signal recognition
           particle 54 kDa protein, chloroplast precursor (SRP54)
           (54 chloroplast protein) (54CP) (FFC) [Arabidopsis
           thaliana]
          Length = 564

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 36/118 (30%), Positives = 57/118 (48%)
 Frame = +1

Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXXXXX 417
           P V+   G+ GVGK+T  AK+  +L +   S ++ A D +R  A++QL            
Sbjct: 176 PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQL------------ 223

Query: 418 XXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRAL 591
                    V +Y  G     A IA + ++ A     DVV++DTAGR+Q ++ +M  L
Sbjct: 224 -VILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDEL 280


>At1g15310.1 68414.m01832 signal recognition particle 54 kDa protein
           1 / SRP54 (SRP-54) (SRP-54A) identical to
           Swiss-Prot:P37106 signal recognition particle 54 kDa
           protein 1 (SRP54) [Arabidopsis thaliana]
          Length = 479

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 31/127 (24%), Positives = 56/127 (44%)
 Frame = +1

Query: 220 AKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRX 399
           A ++ +P V+ F G+ G GK+T   K  ++  +      +   DTFRAGA +QL+ +   
Sbjct: 95  APKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNA-- 152

Query: 400 XXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPL 579
                          +  Y      D   IA+E +      K D++++DT+GR +    L
Sbjct: 153 -----------TKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASL 201

Query: 580 MRALAKL 600
              + ++
Sbjct: 202 FEEMRQV 208


>At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein
           3 / SRP54 (SRP-54C) identical to SP|P49967 Signal
           recognition particle 54 kDa protein 3 (SRP54)
           {Arabidopsis thaliana}
          Length = 495

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 29/127 (22%), Positives = 54/127 (42%)
 Frame = +1

Query: 220 AKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRX 399
           A ++ +  V+ F G+ G GK+T   K  ++  +      +   DTFRAGA +QL+ +   
Sbjct: 95  APKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNA-- 152

Query: 400 XXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPL 579
                          +  Y      D   IA+E +        D++++DT+GR +    L
Sbjct: 153 -----------TKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASL 201

Query: 580 MRALAKL 600
              + ++
Sbjct: 202 FEEMRQV 208


>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
           2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
           recognition particle 54 kDa protein 2 (SRP54)
           {Arabidopsis thaliana}
          Length = 497

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
 Frame = +1

Query: 220 AKQEGRPYVMAFCGVNG--VGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHT 393
           A ++ +P V+ F G+ G  + K   +  +   +        +   DTFRAGA +QL+ + 
Sbjct: 95  APKKAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNA 154

Query: 394 RXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNE 573
                            +  Y    G D   IA+E +        D++++DT+GR +   
Sbjct: 155 -------------TKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQA 201

Query: 574 PLMRALAKL 600
            L   + ++
Sbjct: 202 SLFEEMRQI 210


>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 966

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 97  EGKVLGTFD-SVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGV 273
           E K++ T    V+  +  T+++    ++  +  +  ++  LH   E    ++  CG +G+
Sbjct: 160 ESKMVETIARDVSNKLNTTISKDFEDMVGIEAHLQKMQSLLHLDNEDEAMIVGICGPSGI 219

Query: 274 GKST 285
           GK+T
Sbjct: 220 GKTT 223


>At2g29680.2 68415.m03608 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 508

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +1

Query: 79  SVAIKLEGKVLGTFDSVAKTVKATLTES-----LVRILSPKRRV-DILRDCLHAKQEGRP 240
           SV ++++ K     D   K VK  L  S     +V     +RRV + ++ C+  K+ G  
Sbjct: 96  SVCLEVKSKWNPKDDEQMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSL 155

Query: 241 YVMAFCGVNGVGKSTNLAKI 300
           Y+   CG  G GKS ++ K+
Sbjct: 156 YI---CGCPGTGKSLSMEKV 172


>At2g29680.1 68415.m03607 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 539

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +1

Query: 79  SVAIKLEGKVLGTFDSVAKTVKATLTES-----LVRILSPKRRV-DILRDCLHAKQEGRP 240
           SV ++++ K     D   K VK  L  S     +V     +RRV + ++ C+  K+ G  
Sbjct: 96  SVCLEVKSKWNPKDDEQMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSL 155

Query: 241 YVMAFCGVNGVGKSTNLAKI 300
           Y+   CG  G GKS ++ K+
Sbjct: 156 YI---CGCPGTGKSLSMEKV 172


>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
           (TITAN3) very strong similarity to SMC2-like condensin
           (TITAN3) [Arabidopsis thaliana] GI:14279543; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345
           P+  A  G+NG GKS  L  ICF L   +L  + AA
Sbjct: 25  PHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
           SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
           GI:14279543; contains Pfam profiles PF02483: SMC family
           C-terminal domain, PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1171

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345
           P+  A  G+NG GKS  L  ICF L   +L  + AA
Sbjct: 25  PHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60


>At2g20020.1 68415.m02340 expressed protein
          Length = 701

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 396 PRVRAQLLHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAERHD 244
           PR  +++         A R++ R+   ++ EA++R+ RRF  A      HD
Sbjct: 22  PRAPSEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFDAATKIVHTHD 72


>At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing
           protein similar to Dof zinc finger protein GB:CAA08755
           GI:3341468 from [Nicotiana tabacum]
          Length = 352

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -2

Query: 440 CRAWWRAGGCSALRCRVCVRSCSTAPARNVSHAAISTDRSFSINQKQIFARFVDLPTPFT 261
           CR +W AGG  +LR  + V        R+ S+++ S+  S S ++K +FA   + PTP  
Sbjct: 79  CRRYWTAGG--SLR-NIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFAN-NNTPTPPL 134

Query: 260 P 258
           P
Sbjct: 135 P 135


>At1g64300.1 68414.m07287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 717

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 121 DSVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGV 264
           D +AK ++ T    L    SPK  V +++ C H++   RP   + C +
Sbjct: 462 DKMAKNIR-TGERPLFPFPSPKYLVSLIKRCWHSEPSQRPTFSSICRI 508


>At1g61560.1 68414.m06935 seven transmembrane MLO family protein /
           MLO-like protein 6 (MLO6) idenctical to membrane protein
           Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam
           profile          PF03094: Mlo family
          Length = 583

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 429 VARGRVQRVEVPRVRAQLLHGAGAERVARRYQHRQIVLDQPEADL-RQVRRFTDAVHP 259
           + +G +  + +P+  A  +H   A   AR+Y  + +  +  E +L R++ +  D++ P
Sbjct: 74  IGQGYISNICIPKNIAASMHPCSASEEARKYGKKDVPKEDEEENLRRKLLQLVDSLIP 131


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
 Frame = +3

Query: 81  CC-HQTRGEGARYLRQCCQ------DGEGYPHRVPRADTVAEASRGHPAGLS-ARQAGGQ 236
           CC H   G    Y R CC        G G+ HR    D      RGH  G     +  G+
Sbjct: 52  CCRHCCGGRRHDYGRDCCHCDHCHGHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGR 111

Query: 237 ALRHGVLRGERR 272
             RHG  RG  R
Sbjct: 112 DHRHGRDRGHHR 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,550
Number of Sequences: 28952
Number of extensions: 294668
Number of successful extensions: 953
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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