BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0992 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g30600.1 68417.m04341 signal recognition particle receptor al... 223 1e-58 At2g45770.1 68415.m05693 signal recognition particle receptor pr... 62 3e-10 At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 53 2e-07 At1g15310.1 68414.m01832 signal recognition particle 54 kDa prot... 51 7e-07 At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot... 46 3e-05 At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot... 37 0.012 At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 31 0.82 At2g29680.2 68415.m03608 cell division control protein CDC6, put... 30 1.9 At2g29680.1 68415.m03607 cell division control protein CDC6, put... 30 1.9 At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 29 3.3 At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 29 3.3 At2g20020.1 68415.m02340 expressed protein 29 4.4 At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ... 28 5.8 At1g64300.1 68414.m07287 protein kinase family protein contains ... 28 5.8 At1g61560.1 68414.m06935 seven transmembrane MLO family protein ... 28 5.8 At3g63100.1 68416.m07087 glycine-rich protein 28 7.6 >At4g30600.1 68417.m04341 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens}; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P06625) [Canis familiaris}; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain Length = 634 Score = 223 bits (544), Expect = 1e-58 Identities = 111/200 (55%), Positives = 147/200 (73%) Frame = +1 Query: 4 PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183 P L L++ L+ KNVA +IA KLC+SV LEGK L +F ++ TV+A + ++LVRIL+P Sbjct: 350 PALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTP 409 Query: 184 KRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRA 363 +R +DILRD AK++ +PYV+ F GVNGVGKSTNLAK+ +WL ++ +SV++AACDTFR+ Sbjct: 410 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRS 469 Query: 364 GAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 543 GAVEQLRTH R + ++EKGY KD A +A EAI+ A+ +DVVL+ Sbjct: 470 GAVEQLRTHAR-------------RLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLV 516 Query: 544 DTAGRMQDNEPLMRALAKLI 603 DTAGRMQDNEPLMRAL+KLI Sbjct: 517 DTAGRMQDNEPLMRALSKLI 536 Score = 58.0 bits (134), Expect = 6e-09 Identities = 27/43 (62%), Positives = 33/43 (76%) Frame = +2 Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736 +N+PD VLFVG ALV N+AVDQL KFNQ L+D S+ P +ID Sbjct: 538 LNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLID 580 >At2g45770.1 68415.m05693 signal recognition particle receptor protein, chloroplast (FTSY) similar to Cell division protein ftsY homolog (SP:O67066) {Aquifex aeolicus}; contains Pfam PF00448: SRP54-type protein, GTPase domain contains TIGRFAM TIGR00064: signal recognition particle-docking protein FtsY contains Pfam PF02881: SRP54-type protein, helical bundle domain; identical to cDNA chloroplast FtsY homolog GI:4583547 Length = 366 Score = 62.5 bits (145), Expect = 3e-10 Identities = 53/193 (27%), Positives = 84/193 (43%) Frame = +1 Query: 13 DKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRR 192 D++ D L + +D K+ + +L ++ +K L ES++ +L+ K Sbjct: 94 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153 Query: 193 VDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAV 372 L+ +P V+ GVNG GK+T+L K+ L VL+AA DTFRA A Sbjct: 154 KTELQLGFR-----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS 208 Query: 373 EQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTA 552 +QL + +G AA + +A++ + DVVL DT+ Sbjct: 209 DQLEIWAERTGCE------------IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTS 256 Query: 553 GRMQDNEPLMRAL 591 GR+ N LM L Sbjct: 257 GRLHTNYSLMEEL 269 >At5g03940.1 68418.m00374 signal recognition particle 54 kDa protein, chloroplast / 54 chloroplast protein / SRP54 (FFC) identical to Swiss-Prot:P37107 signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC) [Arabidopsis thaliana] Length = 564 Score = 53.2 bits (122), Expect = 2e-07 Identities = 36/118 (30%), Positives = 57/118 (48%) Frame = +1 Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXXXXX 417 P V+ G+ GVGK+T AK+ +L + S ++ A D +R A++QL Sbjct: 176 PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQL------------ 223 Query: 418 XXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRAL 591 V +Y G A IA + ++ A DVV++DTAGR+Q ++ +M L Sbjct: 224 -VILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDEL 280 >At1g15310.1 68414.m01832 signal recognition particle 54 kDa protein 1 / SRP54 (SRP-54) (SRP-54A) identical to Swiss-Prot:P37106 signal recognition particle 54 kDa protein 1 (SRP54) [Arabidopsis thaliana] Length = 479 Score = 51.2 bits (117), Expect = 7e-07 Identities = 31/127 (24%), Positives = 56/127 (44%) Frame = +1 Query: 220 AKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRX 399 A ++ +P V+ F G+ G GK+T K ++ + + DTFRAGA +QL+ + Sbjct: 95 APKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNA-- 152 Query: 400 XXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPL 579 + Y D IA+E + K D++++DT+GR + L Sbjct: 153 -----------TKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASL 201 Query: 580 MRALAKL 600 + ++ Sbjct: 202 FEEMRQV 208 >At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) identical to SP|P49967 Signal recognition particle 54 kDa protein 3 (SRP54) {Arabidopsis thaliana} Length = 495 Score = 46.0 bits (104), Expect = 3e-05 Identities = 29/127 (22%), Positives = 54/127 (42%) Frame = +1 Query: 220 AKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRX 399 A ++ + V+ F G+ G GK+T K ++ + + DTFRAGA +QL+ + Sbjct: 95 APKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNA-- 152 Query: 400 XXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPL 579 + Y D IA+E + D++++DT+GR + L Sbjct: 153 -----------TKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASL 201 Query: 580 MRALAKL 600 + ++ Sbjct: 202 FEEMRQV 208 >At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) identical to SP|P49966 Signal recognition particle 54 kDa protein 2 (SRP54) {Arabidopsis thaliana} Length = 497 Score = 37.1 bits (82), Expect = 0.012 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Frame = +1 Query: 220 AKQEGRPYVMAFCGVNG--VGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHT 393 A ++ +P V+ F G+ G + K + + + + DTFRAGA +QL+ + Sbjct: 95 APKKAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNA 154 Query: 394 RXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNE 573 + Y G D IA+E + D++++DT+GR + Sbjct: 155 -------------TKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQA 201 Query: 574 PLMRALAKL 600 L + ++ Sbjct: 202 SLFEEMRQI 210 >At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 966 Score = 31.1 bits (67), Expect = 0.82 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +1 Query: 97 EGKVLGTFD-SVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGV 273 E K++ T V+ + T+++ ++ + + ++ LH E ++ CG +G+ Sbjct: 160 ESKMVETIARDVSNKLNTTISKDFEDMVGIEAHLQKMQSLLHLDNEDEAMIVGICGPSGI 219 Query: 274 GKST 285 GK+T Sbjct: 220 GKTT 223 >At2g29680.2 68415.m03608 cell division control protein CDC6, putative almost identical to DNA replication protein CDC6 GI:18056480 from [Arabidopsis thaliana]; identical to cDNA CDC6 protein (2g29680 gene) GI:18056479 Length = 508 Score = 29.9 bits (64), Expect = 1.9 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Frame = +1 Query: 79 SVAIKLEGKVLGTFDSVAKTVKATLTES-----LVRILSPKRRV-DILRDCLHAKQEGRP 240 SV ++++ K D K VK L S +V +RRV + ++ C+ K+ G Sbjct: 96 SVCLEVKSKWNPKDDEQMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSL 155 Query: 241 YVMAFCGVNGVGKSTNLAKI 300 Y+ CG G GKS ++ K+ Sbjct: 156 YI---CGCPGTGKSLSMEKV 172 >At2g29680.1 68415.m03607 cell division control protein CDC6, putative almost identical to DNA replication protein CDC6 GI:18056480 from [Arabidopsis thaliana]; identical to cDNA CDC6 protein (2g29680 gene) GI:18056479 Length = 539 Score = 29.9 bits (64), Expect = 1.9 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Frame = +1 Query: 79 SVAIKLEGKVLGTFDSVAKTVKATLTES-----LVRILSPKRRV-DILRDCLHAKQEGRP 240 SV ++++ K D K VK L S +V +RRV + ++ C+ K+ G Sbjct: 96 SVCLEVKSKWNPKDDEQMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSL 155 Query: 241 YVMAFCGVNGVGKSTNLAKI 300 Y+ CG G GKS ++ K+ Sbjct: 156 YI---CGCPGTGKSLSMEKV 172 >At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (TITAN3) very strong similarity to SMC2-like condensin (TITAN3) [Arabidopsis thaliana] GI:14279543; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1175 Score = 29.1 bits (62), Expect = 3.3 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +1 Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345 P+ A G+NG GKS L ICF L +L + AA Sbjct: 25 PHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 >At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to SMC2-like condensin (TITAN3) [Arabidopsis thaliana] GI:14279543; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1171 Score = 29.1 bits (62), Expect = 3.3 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +1 Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345 P+ A G+NG GKS L ICF L +L + AA Sbjct: 25 PHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 >At2g20020.1 68415.m02340 expressed protein Length = 701 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 Query: 396 PRVRAQLLHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAERHD 244 PR +++ A R++ R+ ++ EA++R+ RRF A HD Sbjct: 22 PRAPSEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFDAATKIVHTHD 72 >At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing protein similar to Dof zinc finger protein GB:CAA08755 GI:3341468 from [Nicotiana tabacum] Length = 352 Score = 28.3 bits (60), Expect = 5.8 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = -2 Query: 440 CRAWWRAGGCSALRCRVCVRSCSTAPARNVSHAAISTDRSFSINQKQIFARFVDLPTPFT 261 CR +W AGG +LR + V R+ S+++ S+ S S ++K +FA + PTP Sbjct: 79 CRRYWTAGG--SLR-NIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFAN-NNTPTPPL 134 Query: 260 P 258 P Sbjct: 135 P 135 >At1g64300.1 68414.m07287 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 717 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +1 Query: 121 DSVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGV 264 D +AK ++ T L SPK V +++ C H++ RP + C + Sbjct: 462 DKMAKNIR-TGERPLFPFPSPKYLVSLIKRCWHSEPSQRPTFSSICRI 508 >At1g61560.1 68414.m06935 seven transmembrane MLO family protein / MLO-like protein 6 (MLO6) idenctical to membrane protein Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam profile PF03094: Mlo family Length = 583 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 429 VARGRVQRVEVPRVRAQLLHGAGAERVARRYQHRQIVLDQPEADL-RQVRRFTDAVHP 259 + +G + + +P+ A +H A AR+Y + + + E +L R++ + D++ P Sbjct: 74 IGQGYISNICIPKNIAASMHPCSASEEARKYGKKDVPKEDEEENLRRKLLQLVDSLIP 131 >At3g63100.1 68416.m07087 glycine-rich protein Length = 199 Score = 27.9 bits (59), Expect = 7.6 Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 8/72 (11%) Frame = +3 Query: 81 CC-HQTRGEGARYLRQCCQ------DGEGYPHRVPRADTVAEASRGHPAGLS-ARQAGGQ 236 CC H G Y R CC G G+ HR D RGH G + G+ Sbjct: 52 CCRHCCGGRRHDYGRDCCHCDHCHGHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGR 111 Query: 237 ALRHGVLRGERR 272 RHG RG R Sbjct: 112 DHRHGRDRGHHR 123 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,694,550 Number of Sequences: 28952 Number of extensions: 294668 Number of successful extensions: 953 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 952 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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