Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0992
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30600.1 68417.m04341 signal recognition particle receptor al... 223 1e-58
At2g45770.1 68415.m05693 signal recognition particle receptor pr... 62 3e-10
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 53 2e-07
At1g15310.1 68414.m01832 signal recognition particle 54 kDa prot... 51 7e-07
At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot... 46 3e-05
At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot... 37 0.012
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 31 0.82
At2g29680.2 68415.m03608 cell division control protein CDC6, put... 30 1.9
At2g29680.1 68415.m03607 cell division control protein CDC6, put... 30 1.9
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 29 3.3
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 29 3.3
At2g20020.1 68415.m02340 expressed protein 29 4.4
At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ... 28 5.8
At1g64300.1 68414.m07287 protein kinase family protein contains ... 28 5.8
At1g61560.1 68414.m06935 seven transmembrane MLO family protein ... 28 5.8
At3g63100.1 68416.m07087 glycine-rich protein 28 7.6
>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
subunit family protein similar to Signal recognition
particle receptor alpha subunit (SR-alpha) (Docking
protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
similar to Signal recognition particle receptor alpha
subunit (SR-alpha) (Docking protein alpha) (DP-alpha)
(SP:P06625) [Canis familiaris}; contains Pfam PF04086:
Signal recognition particle, alpha subunit, N-terminal;
contains Pfam PF00448: SRP54-type protein, GTPase domain
Length = 634
Score = 223 bits (544), Expect = 1e-58
Identities = 111/200 (55%), Positives = 147/200 (73%)
Frame = +1
Query: 4 PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183
P L L++ L+ KNVA +IA KLC+SV LEGK L +F ++ TV+A + ++LVRIL+P
Sbjct: 350 PALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTP 409
Query: 184 KRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRA 363
+R +DILRD AK++ +PYV+ F GVNGVGKSTNLAK+ +WL ++ +SV++AACDTFR+
Sbjct: 410 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRS 469
Query: 364 GAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLI 543
GAVEQLRTH R + ++EKGY KD A +A EAI+ A+ +DVVL+
Sbjct: 470 GAVEQLRTHAR-------------RLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLV 516
Query: 544 DTAGRMQDNEPLMRALAKLI 603
DTAGRMQDNEPLMRAL+KLI
Sbjct: 517 DTAGRMQDNEPLMRALSKLI 536
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
+N+PD VLFVG ALV N+AVDQL KFNQ L+D S+ P +ID
Sbjct: 538 LNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLID 580
>At2g45770.1 68415.m05693 signal recognition particle receptor
protein, chloroplast (FTSY) similar to Cell division
protein ftsY homolog (SP:O67066) {Aquifex aeolicus};
contains Pfam PF00448: SRP54-type protein, GTPase domain
contains TIGRFAM TIGR00064: signal recognition
particle-docking protein FtsY contains Pfam PF02881:
SRP54-type protein, helical bundle domain; identical to
cDNA chloroplast FtsY homolog GI:4583547
Length = 366
Score = 62.5 bits (145), Expect = 3e-10
Identities = 53/193 (27%), Positives = 84/193 (43%)
Frame = +1
Query: 13 DKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRR 192
D++ D L + +D K+ + +L ++ +K L ES++ +L+ K
Sbjct: 94 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153
Query: 193 VDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAV 372
L+ +P V+ GVNG GK+T+L K+ L VL+AA DTFRA A
Sbjct: 154 KTELQLGFR-----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS 208
Query: 373 EQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTA 552
+QL + +G AA + +A++ + DVVL DT+
Sbjct: 209 DQLEIWAERTGCE------------IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTS 256
Query: 553 GRMQDNEPLMRAL 591
GR+ N LM L
Sbjct: 257 GRLHTNYSLMEEL 269
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/118 (30%), Positives = 57/118 (48%)
Frame = +1
Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXXXXX 417
P V+ G+ GVGK+T AK+ +L + S ++ A D +R A++QL
Sbjct: 176 PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQL------------ 223
Query: 418 XXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRAL 591
V +Y G A IA + ++ A DVV++DTAGR+Q ++ +M L
Sbjct: 224 -VILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDEL 280
>At1g15310.1 68414.m01832 signal recognition particle 54 kDa protein
1 / SRP54 (SRP-54) (SRP-54A) identical to
Swiss-Prot:P37106 signal recognition particle 54 kDa
protein 1 (SRP54) [Arabidopsis thaliana]
Length = 479
Score = 51.2 bits (117), Expect = 7e-07
Identities = 31/127 (24%), Positives = 56/127 (44%)
Frame = +1
Query: 220 AKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRX 399
A ++ +P V+ F G+ G GK+T K ++ + + DTFRAGA +QL+ +
Sbjct: 95 APKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNA-- 152
Query: 400 XXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPL 579
+ Y D IA+E + K D++++DT+GR + L
Sbjct: 153 -----------TKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASL 201
Query: 580 MRALAKL 600
+ ++
Sbjct: 202 FEEMRQV 208
>At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein
3 / SRP54 (SRP-54C) identical to SP|P49967 Signal
recognition particle 54 kDa protein 3 (SRP54)
{Arabidopsis thaliana}
Length = 495
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/127 (22%), Positives = 54/127 (42%)
Frame = +1
Query: 220 AKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRX 399
A ++ + V+ F G+ G GK+T K ++ + + DTFRAGA +QL+ +
Sbjct: 95 APKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNA-- 152
Query: 400 XXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPL 579
+ Y D IA+E + D++++DT+GR + L
Sbjct: 153 -----------TKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASL 201
Query: 580 MRALAKL 600
+ ++
Sbjct: 202 FEEMRQV 208
>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
recognition particle 54 kDa protein 2 (SRP54)
{Arabidopsis thaliana}
Length = 497
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Frame = +1
Query: 220 AKQEGRPYVMAFCGVNG--VGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHT 393
A ++ +P V+ F G+ G + K + + + + DTFRAGA +QL+ +
Sbjct: 95 APKKAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNA 154
Query: 394 RXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNE 573
+ Y G D IA+E + D++++DT+GR +
Sbjct: 155 -------------TKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQA 201
Query: 574 PLMRALAKL 600
L + ++
Sbjct: 202 SLFEEMRQI 210
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 97 EGKVLGTFD-SVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGV 273
E K++ T V+ + T+++ ++ + + ++ LH E ++ CG +G+
Sbjct: 160 ESKMVETIARDVSNKLNTTISKDFEDMVGIEAHLQKMQSLLHLDNEDEAMIVGICGPSGI 219
Query: 274 GKST 285
GK+T
Sbjct: 220 GKTT 223
>At2g29680.2 68415.m03608 cell division control protein CDC6,
putative almost identical to DNA replication protein
CDC6 GI:18056480 from [Arabidopsis thaliana]; identical
to cDNA CDC6 protein (2g29680 gene) GI:18056479
Length = 508
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 79 SVAIKLEGKVLGTFDSVAKTVKATLTES-----LVRILSPKRRV-DILRDCLHAKQEGRP 240
SV ++++ K D K VK L S +V +RRV + ++ C+ K+ G
Sbjct: 96 SVCLEVKSKWNPKDDEQMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSL 155
Query: 241 YVMAFCGVNGVGKSTNLAKI 300
Y+ CG G GKS ++ K+
Sbjct: 156 YI---CGCPGTGKSLSMEKV 172
>At2g29680.1 68415.m03607 cell division control protein CDC6,
putative almost identical to DNA replication protein
CDC6 GI:18056480 from [Arabidopsis thaliana]; identical
to cDNA CDC6 protein (2g29680 gene) GI:18056479
Length = 539
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 79 SVAIKLEGKVLGTFDSVAKTVKATLTES-----LVRILSPKRRV-DILRDCLHAKQEGRP 240
SV ++++ K D K VK L S +V +RRV + ++ C+ K+ G
Sbjct: 96 SVCLEVKSKWNPKDDEQMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSL 155
Query: 241 YVMAFCGVNGVGKSTNLAKI 300
Y+ CG G GKS ++ K+
Sbjct: 156 YI---CGCPGTGKSLSMEKV 172
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345
P+ A G+NG GKS L ICF L +L + AA
Sbjct: 25 PHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345
P+ A G+NG GKS L ICF L +L + AA
Sbjct: 25 PHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
>At2g20020.1 68415.m02340 expressed protein
Length = 701
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 396 PRVRAQLLHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAERHD 244
PR +++ A R++ R+ ++ EA++R+ RRF A HD
Sbjct: 22 PRAPSEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFDAATKIVHTHD 72
>At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing
protein similar to Dof zinc finger protein GB:CAA08755
GI:3341468 from [Nicotiana tabacum]
Length = 352
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = -2
Query: 440 CRAWWRAGGCSALRCRVCVRSCSTAPARNVSHAAISTDRSFSINQKQIFARFVDLPTPFT 261
CR +W AGG +LR + V R+ S+++ S+ S S ++K +FA + PTP
Sbjct: 79 CRRYWTAGG--SLR-NIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFAN-NNTPTPPL 134
Query: 260 P 258
P
Sbjct: 135 P 135
>At1g64300.1 68414.m07287 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 717
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 121 DSVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGV 264
D +AK ++ T L SPK V +++ C H++ RP + C +
Sbjct: 462 DKMAKNIR-TGERPLFPFPSPKYLVSLIKRCWHSEPSQRPTFSSICRI 508
>At1g61560.1 68414.m06935 seven transmembrane MLO family protein /
MLO-like protein 6 (MLO6) idenctical to membrane protein
Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam
profile PF03094: Mlo family
Length = 583
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 429 VARGRVQRVEVPRVRAQLLHGAGAERVARRYQHRQIVLDQPEADL-RQVRRFTDAVHP 259
+ +G + + +P+ A +H A AR+Y + + + E +L R++ + D++ P
Sbjct: 74 IGQGYISNICIPKNIAASMHPCSASEEARKYGKKDVPKEDEEENLRRKLLQLVDSLIP 131
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Frame = +3
Query: 81 CC-HQTRGEGARYLRQCCQ------DGEGYPHRVPRADTVAEASRGHPAGLS-ARQAGGQ 236
CC H G Y R CC G G+ HR D RGH G + G+
Sbjct: 52 CCRHCCGGRRHDYGRDCCHCDHCHGHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGR 111
Query: 237 ALRHGVLRGERR 272
RHG RG R
Sbjct: 112 DHRHGRDRGHHR 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,550
Number of Sequences: 28952
Number of extensions: 294668
Number of successful extensions: 953
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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