Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0990
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 34 0.14
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0) 31 1.00
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 30 2.3
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11) 29 4.0
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6) 29 4.0
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 29 5.3
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0) 28 7.0
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05) 28 7.0
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 33.9 bits (74), Expect = 0.14
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Frame = +2
Query: 23 VNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKNVHIIDGVK 181
V N+T+Y G WY++ S F E E+N C +A+Y L D VV DG
Sbjct: 241 VPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNRDKKPDGEL 300
Query: 182 KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVL 292
K I G A D KL V F + +GS +L
Sbjct: 301 KQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334
>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 791
Score = 31.1 bits (67), Expect = 1.00
Identities = 20/110 (18%), Positives = 42/110 (38%)
Frame = +2
Query: 83 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 262
N + G+ + EY L +++ N I D + K ++ + +K +
Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456
Query: 263 ISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK 412
+ ++L N ++ C D +SH +F+ L N G+ +
Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVNVNKGGEGE 506
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 75 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 200
NF T +AL++ W VTW R C +T S + GR
Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74
>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
Length = 372
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 457 VYLFGVFLDEIIDSSFSVAFKLLVSRED 374
VY+F FLDE + +A KLLV E+
Sbjct: 137 VYVFAKFLDERLKRKIQIATKLLVKHEN 164
>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
Length = 395
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Frame = +2
Query: 197 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QVLATDYNNYAIAYNCKYDDKKKSHQVF 367
T ++T+ + + FK EIS+ G+V +V+ATD + I + K + + HQ
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187
Query: 368 VWILSRN--KKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 511
VW ++++ KKL AK N + K + + H + AC+ +S
Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSN----HLWWCASACEGSS 233
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 466 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 341
F+R+ + GVF +E++ S ++V E DEHL RL +V
Sbjct: 807 FQRL-MQGVFREELLQSMMVYLDDIIVFAESIDEHLRRLEVV 847
>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
Length = 1013
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 254 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 385
FGE ++GS+ + A ++A A Y D+K Q W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547
>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
Length = 264
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 254 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 385
FGE ++GS+ + A ++A A Y D+K Q W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 27.9 bits (59), Expect = 9.3
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Frame = +2
Query: 11 RLKPVNNFN-LTAYQGIWYEISKFPNESEKNGKCSSAEYKLE-GDVVKVKNV--HIIDGV 178
++ P+N + + AY I Y+I K ++ E +GK + ++ G++ K + +I+
Sbjct: 592 KVTPLNKVDEIAAYHNICYDIGK--SKGECDGKMVESLDRIPYGEMPKWGSTARFLINAK 649
Query: 179 KKYIEGTAKLTDDANKAAKLTVTF--KF------GEISRDGSVQVLATDYNNYAIAYNCK 334
+K G K + ++ K+ F KF G +S D V + + NNY + +
Sbjct: 650 RKLGLGVKKPKNGKSRRVKICSGFAIKFKSPKESGRLSDDQQVMLQSNKDNNYKVMASND 709
Query: 335 YDD 343
YD+
Sbjct: 710 YDE 712
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,781
Number of Sequences: 59808
Number of extensions: 390130
Number of successful extensions: 1206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -