BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0990 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 34 0.14 SB_21941| Best HMM Match : Kinesin (HMM E-Value=0) 31 1.00 SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 30 2.3 SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11) 29 4.0 SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6) 29 4.0 SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 29 5.3 SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0) 28 7.0 SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05) 28 7.0 SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 >SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) Length = 418 Score = 33.9 bits (74), Expect = 0.14 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 7/97 (7%) Frame = +2 Query: 23 VNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKNVHIIDGVK 181 V N+T+Y G WY++ S F E E+N C +A+Y L D VV DG Sbjct: 241 VPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNRDKKPDGEL 300 Query: 182 KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVL 292 K I G A D KL V F + +GS +L Sbjct: 301 KQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334 >SB_21941| Best HMM Match : Kinesin (HMM E-Value=0) Length = 791 Score = 31.1 bits (67), Expect = 1.00 Identities = 20/110 (18%), Positives = 42/110 (38%) Frame = +2 Query: 83 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 262 N + G+ + EY L +++ N I D + K ++ + +K + Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456 Query: 263 ISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK 412 + ++L N ++ C D +SH +F+ L N G+ + Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVNVNKGGEGE 506 >SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) Length = 442 Score = 29.9 bits (64), Expect = 2.3 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 75 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 200 NF T +AL++ W VTW R C +T S + GR Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74 >SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11) Length = 372 Score = 29.1 bits (62), Expect = 4.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 457 VYLFGVFLDEIIDSSFSVAFKLLVSRED 374 VY+F FLDE + +A KLLV E+ Sbjct: 137 VYVFAKFLDERLKRKIQIATKLLVKHEN 164 >SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6) Length = 395 Score = 29.1 bits (62), Expect = 4.0 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = +2 Query: 197 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QVLATDYNNYAIAYNCKYDDKKKSHQVF 367 T ++T+ + + FK EIS+ G+V +V+ATD + I + K + + HQ Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187 Query: 368 VWILSRN--KKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 511 VW ++++ KKL AK N + K + + H + AC+ +S Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSN----HLWWCASACEGSS 233 >SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) Length = 1170 Score = 28.7 bits (61), Expect = 5.3 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -3 Query: 466 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 341 F+R+ + GVF +E++ S ++V E DEHL RL +V Sbjct: 807 FQRL-MQGVFREELLQSMMVYLDDIIVFAESIDEHLRRLEVV 847 >SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0) Length = 1013 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 254 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 385 FGE ++GS+ + A ++A A Y D+K Q W++S+ Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547 >SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05) Length = 264 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 254 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 385 FGE ++GS+ + A ++A A Y D+K Q W++S+ Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245 >SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1950 Score = 27.9 bits (59), Expect = 9.3 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Frame = +2 Query: 11 RLKPVNNFN-LTAYQGIWYEISKFPNESEKNGKCSSAEYKLE-GDVVKVKNV--HIIDGV 178 ++ P+N + + AY I Y+I K ++ E +GK + ++ G++ K + +I+ Sbjct: 592 KVTPLNKVDEIAAYHNICYDIGK--SKGECDGKMVESLDRIPYGEMPKWGSTARFLINAK 649 Query: 179 KKYIEGTAKLTDDANKAAKLTVTF--KF------GEISRDGSVQVLATDYNNYAIAYNCK 334 +K G K + ++ K+ F KF G +S D V + + NNY + + Sbjct: 650 RKLGLGVKKPKNGKSRRVKICSGFAIKFKSPKESGRLSDDQQVMLQSNKDNNYKVMASND 709 Query: 335 YDD 343 YD+ Sbjct: 710 YDE 712 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,181,781 Number of Sequences: 59808 Number of extensions: 390130 Number of successful extensions: 1206 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1193 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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