Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0989
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 99 6e-22
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 64 2e-11
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 52 7e-08
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 42 9e-05
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 34 0.019
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 32 0.076
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 31 0.23
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 28 1.2
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 28 1.2
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 28 1.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 2.2
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 27 2.9
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 26 5.0
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 26 6.6
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 6.6
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 8.7
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 8.7
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 25 8.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 8.7
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 8.7
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 25 8.7
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 99.1 bits (236), Expect = 6e-22
Identities = 62/151 (41%), Positives = 85/151 (56%), Gaps = 10/151 (6%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 397
+T G VG PNVGKSS +N+++G K VSVS TPG TKHFQT+ L+ +V L DCPGLVFPS
Sbjct: 302 MTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSF 361
Query: 398 VPRPIQILM-GSYPIAQLREPYTAIRYLGERLNLPQL-------LRIEHPDNDDTWSP-- 547
+++ G PI QLRE + ER+ L +RI+ + T P
Sbjct: 362 ATTQADLVLDGVLPIDQLREYTGPSALMAERIPKEVLETLYTIRIRIKPIEEGGTGVPSA 421
Query: 548 RDICDGWAKKRSYLTAKSARLDTYRAANSLL 640
+++ +A+ R ++ A D RAA LL
Sbjct: 422 QEVLFPFARSRGFMRAHHGTPDDSRAARILL 452
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 64.1 bits (149), Expect = 2e-11
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 397
++VG +G PN GKSS++N++ +KV +V+ PG TK +Q V L ++ L DCPG+V PS
Sbjct: 311 ISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSS 370
Query: 398 VPRPIQILM-GSYPIAQLREPYTAIRYLGERLNLPQLLR 511
++L+ G + + P I + R + L R
Sbjct: 371 NDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLER 409
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 52.4 bits (120), Expect = 7e-08
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = +2
Query: 170 KADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKV------VSVSRTPGHTKHF 331
K+ +Y A ++ ++ +LTVG +G PNVGKSS++N+++ R G T
Sbjct: 255 KSLKSYSAKKKLKS-SLTVGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSL 313
Query: 332 QTVYLTPQVRLCDCPGLVFPS 394
+ V L ++RL D PG+VFPS
Sbjct: 314 REVKLDNKLRLVDSPGIVFPS 334
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 41.9 bits (94), Expect = 9e-05
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Frame = +2
Query: 209 NGTLTVGCVGQPNVGKSSLMNSVMG---RKVVS--VSRTPGHTKHFQTV---YLTPQVRL 364
NG + V VG PN GKSS++NS+ RK S V PG TK + + V +
Sbjct: 143 NGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYM 202
Query: 365 CDCPGLVFPSKVPRPIQILMGSYPIAQLRE----PYTAIRYLGERLNLPQLLRIEHPDND 532
D PG++ PS + +P +L S + ++E P T + YL LN RI+ P
Sbjct: 203 LDTPGIMTPS-ITKPEDMLKLSL-VGCVKEGIVHPVTVVDYLLFHLN-----RID-PSLY 254
Query: 533 DTWS-PRDICDGWAKKRSYLTAK 598
WS P + D + + +Y K
Sbjct: 255 SKWSLPTNDVDEFLQNTAYKARK 277
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 206 RNGTLTVGCVGQPNVGKSSLMNSVMGRK--VVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
R G TVG +G P+VGKS+LM + G + + T T Y ++++ D PG
Sbjct: 60 RTGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPG 119
Query: 380 LVFPSK 397
++ +K
Sbjct: 120 IIEGAK 125
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 32.3 bits (70), Expect = 0.076
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK-----HFQTVYLTPQVRLCDCPG 379
T T+ G PNVGKSS MN V R V V TK HF YL QV D PG
Sbjct: 168 TRTLLVCGYPNVGKSSFMNKVT-RAQVDVQPYAFTTKSLFVGHFDYKYLRWQV--IDTPG 224
Query: 380 LV 385
++
Sbjct: 225 IL 226
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 30.7 bits (66), Expect = 0.23
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 197 ERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325
E R G + V +G N GKSSL+N + R++ VS G T+
Sbjct: 234 EVLRKG-INVAILGPSNAGKSSLINLLANRRISIVSPQSGTTR 275
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 191 AHERYRNGTLTVGCVGQPNVGKSSLM 268
A R N T+ VG +G ++GK+SLM
Sbjct: 2 ADARKNNVTIKVGMIGDSSIGKTSLM 27
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 206 RNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTV--YLTPQVRLCDCPG 379
++G V +G P+VGKS+L++++ K + S V Y ++++ D PG
Sbjct: 59 KSGDARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPG 118
Query: 380 LV 385
++
Sbjct: 119 II 120
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVMGRK 289
+G VG PN GKS+L+N + K
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASK 260
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 362 LCDCPGLVFPSKVPRPIQILMGSYP 436
+ DC LV+PS +P+QI YP
Sbjct: 1834 IADCIELVYPSLSSKPVQISYDIYP 1858
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSL 265
L +G VG PN+GKS+L
Sbjct: 46 LKIGIVGMPNIGKSTL 61
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSV 277
L G VG PNVGKS+ ++
Sbjct: 21 LKTGIVGMPNVGKSTFFRAI 40
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 415 LYGPRHFRRKHQPGTVAETYLRRQVHGLEVLG 320
LY +HF + V+ YL+ Q H + ++G
Sbjct: 140 LYVKKHFESSNDTSNVSPCYLQFQGHSIIIIG 171
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 728 SHRTSRNTLFFSVAGRPQPKAYSTVQRPS 642
S T ++ F + R QPKA ST+QR S
Sbjct: 39 SSATRKHDPFHKLWDRLQPKAQSTIQRTS 67
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRK 289
L V +G+ VGK+S+MN + RK
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRK 32
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 564 PSQMSLGDHVSSLSGCSMRNSCGRFSLSPK 475
P LG H+ S+ +S G SLSPK
Sbjct: 899 PLSFRLGPHMHSVKSFETESSFGNRSLSPK 928
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSV 277
+ +G VG+P+ GKS+++N++
Sbjct: 5 ILIGFVGKPSSGKSTMLNAL 24
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +2
Query: 179 TTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQ 334
T Y A E Y + + +GC V S+ V V G+T F+
Sbjct: 544 TQYLAEEGYTSDSKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFE 595
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 251 GKSSLMNSVMGRKVVSVSRTPGHTK---HFQTVYL 346
G+ L NSV+ +SV+ P H K H + YL
Sbjct: 514 GRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYL 548
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 347 TPQVRLCDCPGLVFP-SKVPRPIQILMGSY 433
T +CDCP +VFP +KV I + SY
Sbjct: 467 TSLFNICDCPCVVFPFTKVDANIDLSDVSY 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,545
Number of Sequences: 5004
Number of extensions: 60987
Number of successful extensions: 179
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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