Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0989
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 89 3e-18
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 87 1e-17
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 69 5e-12
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 66 2e-11
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 50 3e-06
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 46 2e-05
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 42 4e-04
01_06_0603 + 30530486-30530984,30531174-30531202,30531484-305316... 39 0.004
03_02_0267 + 6990674-6990890,6991692-6991761,6991824-6991913,699... 36 0.026
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 36 0.045
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 35 0.060
03_02_0315 - 7401708-7401860,7401962-7402123,7402211-7402279,740... 35 0.079
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 34 0.14
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 33 0.18
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 33 0.24
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 33 0.32
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 32 0.42
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 32 0.56
08_01_0877 - 8607790-8608083,8608174-8608356,8608495-8608665,860... 31 0.98
04_01_0328 - 4330904-4333129 31 1.3
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 31 1.3
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 29 3.9
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 29 3.9
07_01_0075 - 558829-560859 29 5.2
06_01_0668 - 4882174-4884204 29 5.2
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 29 5.2
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 28 6.9
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 28 6.9
02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089 28 6.9
01_06_0002 - 25492807-25494675 28 6.9
10_08_0153 - 15240707-15241019,15241269-15241723 28 9.1
10_07_0046 - 12338705-12339187 28 9.1
09_02_0060 + 3729613-3729863,3730377-3730392 28 9.1
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 28 9.1
01_04_0130 + 16462428-16463210,16463644-16463796,16464707-164647... 28 9.1
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 89.4 bits (212), Expect = 3e-18
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS- 394
+ VG VG PNVGKSS +N+++G K V+ TPG TKHFQT+ ++ ++ LCDCPGLVFPS
Sbjct: 314 VVVGFVGYPNVGKSSTINALVGEKKTGVTHTPGKTKHFQTLIISEELTLCDCPGLVFPSF 373
Query: 395 KVPRPIQILMGSYPIAQLREPYTAIRYLGERLN---LPQLLRIEHP 523
R + G PI ++ + AI+ + +R+ L Q+ +I P
Sbjct: 374 SSSRHEMVSCGVLPIDRMTKHREAIQVVADRVPRSVLEQIYKITLP 419
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 87.4 bits (207), Expect = 1e-17
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS- 394
+ VG VG PNVGKSS +N+++G+K V+ TPG TKHFQT+ ++ ++ LCDCPGLVFPS
Sbjct: 331 VVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLVISEELILCDCPGLVFPSF 390
Query: 395 KVPRPIQILMGSYPIAQLREPYTAIRYLGERLN---LPQLLRIEHP 523
R + G PI ++ + AI+ + R+ L Q+ +I P
Sbjct: 391 SSSRHEMVACGVLPIDRMTKHRGAIQVVANRVPRNVLEQIYKITLP 436
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 68.5 bits (160), Expect = 5e-12
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 397
+TVG VG PNVGKSSL+NS+ +VV+V TPG T+ Q V L +V+L DCPG+V
Sbjct: 269 ITVGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKKVKLLDCPGVVMLKS 328
Query: 398 VPRPIQI-LMGSYPIAQLREPYTAIR 472
+ + L + ++ +P + ++
Sbjct: 329 SNSGVSVALRNCKRVEKMEDPISPVK 354
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/101 (35%), Positives = 57/101 (56%)
Frame = +2
Query: 188 FAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLC 367
FA + ++VG VG PNVGKSS++N++ + V V+ PG TK +Q + LT ++ L
Sbjct: 307 FARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLI 366
Query: 368 DCPGLVFPSKVPRPIQILMGSYPIAQLREPYTAIRYLGERL 490
DCPG+V+ + +L G + L + A ++GE L
Sbjct: 367 DCPGVVYQNNDSETDIVLKGVVRVTNLAD---ASEHIGEVL 404
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQV-RLC--DCPGLV 385
+L+VG VG PN GKSSL N+++G KV +VSR T H LT + ++C D PGL+
Sbjct: 148 SLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLM 207
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 227 GCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLV 385
G VG PNVGKSSL+N ++ R++ + PG T+ + V + L D PG++
Sbjct: 404 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELLDSPGIL 456
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Frame = +2
Query: 203 YRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKH-FQTVYLTP--QVRLCDC 373
+R+G + V +G+PNVGKS+L+N ++G+K+ V+ P T+H + P Q+ L D
Sbjct: 123 HRSGYVAV--LGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDT 180
Query: 374 PGLV 385
PG++
Sbjct: 181 PGVI 184
>01_06_0603 +
30530486-30530984,30531174-30531202,30531484-30531660,
30533662-30533745,30534059-30534277
Length = 335
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Frame = +2
Query: 206 RNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSV-SRTPGHTK---HFQTVY 343
R+G VG+ NVGKSSL+NS++ RK +++ S+ PG T+ HF++++
Sbjct: 130 RDGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFKSLF 179
>03_02_0267 +
6990674-6990890,6991692-6991761,6991824-6991913,
6992635-6992797,6992910-6993137
Length = 255
Score = 36.3 bits (80), Expect = 0.026
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 233 VGQPNVGKSSLMNSVMGRKVVSV-SRTPGHTKHFQTVYLTPQVRLCDCPG 379
+G+ NVGKSSL+N+++ RK ++ S+ PG T+ + L D PG
Sbjct: 45 LGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPG 94
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325
+ VG+PNVGKSS++N+++G VS G T+
Sbjct: 376 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTR 409
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325
V +G+PNVGKS+L N ++G V PG T+
Sbjct: 163 VAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTR 196
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 35.1 bits (77), Expect = 0.060
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 206 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
++G VG VG P+VGKS+L+N + G +V + T +Y +++L D PG
Sbjct: 72 KSGDARVGLVGFPSVGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPG 131
Query: 380 LVFPSK 397
++ +K
Sbjct: 132 IIEGAK 137
>03_02_0315 -
7401708-7401860,7401962-7402123,7402211-7402279,
7403332-7403596,7404613-7404737,7404826-7404933,
7405102-7405249,7406013-7406065
Length = 360
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVS 304
TLT+ +G+ VGKSS +NS++G +V +VS
Sbjct: 71 TLTILVMGKGGVGKSSTVNSIVGERVATVS 100
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVMGR-KVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVF 388
+ G NVGKSSL+N++ + VV S PG T+ L ++ L D PG F
Sbjct: 397 IAFAGVSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFRLASKLCLVDLPGYGF 452
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVM-----------GRKVVSVSRTPGHTKHFQTVYLT--PQ 355
TL V VG PNVGKS+L+NS+ K +V PG T+ ++ P
Sbjct: 136 TLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISSQPS 195
Query: 356 VRLCDCPGLVFPS 394
+ + D PG++ PS
Sbjct: 196 IYVLDTPGVLVPS 208
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 33.1 bits (72), Expect = 0.24
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSV--MGR---------KVVSVSRTPGHTKHFQ--TVYLTPQ 355
T TV VG PNVGKS+++N++ +GR K VS PG TK V P
Sbjct: 135 TGTVLLVGIPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPN 194
Query: 356 VRLCDCPGLVFP 391
+ + D PG++ P
Sbjct: 195 IYVLDTPGVLSP 206
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325
L + VG+PNVGKS+L+N+++ + V V G T+
Sbjct: 312 LQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTR 347
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 221 TVGCVGQPNVGKSSLMNSV 277
TV VG+PNVGKS+L N V
Sbjct: 84 TVILVGRPNVGKSALFNRV 102
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +2
Query: 170 KADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLT 349
K+ Y +++ + + + +G+ VGKS+++NS+MG + ++ G T + + V
Sbjct: 4898 KSSQQYHDNQKDLSFSCNILVLGKIGVGKSTVINSIMGEEKNKINAFDGATTNVRLVSSV 4957
Query: 350 P---QVRLCDCPGL 382
+V + D PGL
Sbjct: 4958 VDGIKVNIIDTPGL 4971
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 194 HERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325
+++ L V +G+PNVGKSSL+N+ + V+ G T+
Sbjct: 298 YDKLLQSGLQVAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTR 341
>08_01_0877 -
8607790-8608083,8608174-8608356,8608495-8608665,
8608765-8608925,8609012-8609093,8609197-8609229,
8609359-8609597,8609686-8609850,8609955-8610204,
8610314-8611414,8611841-8611960,8612626-8612691
Length = 954
Score = 31.1 bits (67), Expect = 0.98
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 199 AVQERHADRRLRGPAQRRQVLAHELRDGPQGGLRVADPGPHQALPDRVPDAAGTSLRLSR 378
A+ +R+ADR LR A RQ + +DGP G P P D+A T R
Sbjct: 446 AIIDRYADRGLRSLAVARQEVPERRKDGPGGPWEFVGLLPLLDPPRH--DSAETIRRALH 503
Query: 379 AGVSVE 396
GV+V+
Sbjct: 504 LGVNVK 509
>04_01_0328 - 4330904-4333129
Length = 741
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Frame = +1
Query: 424 GFISHSPAQGAVHRHKVLG*EAKPTAAVAHRAPGQRRHVVAQGHLRWLGEETQLSYSEIC 603
GF+ H + RH+ L A H R +Q H +W G+ QLS ++
Sbjct: 351 GFLLHRGLRHGWIRHEALC--ASRWLRFHHAMASVGRIANSQAHRKWCGKMGQLSVLQLI 408
Query: 604 QIGHVQSSEQPAXDGRWTVEYA-----FGCGLPATLKKRVFREVR 723
G S + D W E A +PA +K+ VFR VR
Sbjct: 409 ITG-AGSDRGESQDRSWDKECARYSEKNTMVIPAEVKEVVFRRVR 452
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVS 304
+L G VG PNVGKS+L N+++ R + S S
Sbjct: 60 SLRAGIVGLPNVGKSTLFNAIV-RNLPSAS 88
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVM------GRKVVSVSRTPGHTKHFQTV--YLTPQVRLCDCPG 379
V VG NVGKS+L+N++ G ++ + PG T V L Q +L D PG
Sbjct: 236 VWAVGARNVGKSTLLNAIARCSGIEGGPTLTEAPVPGTTLDVIQVDGVLGSQAKLFDTPG 295
Query: 380 LV 385
L+
Sbjct: 296 LL 297
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQV 358
V +G+ GKSSL+NS++G + T G + ++ PQV
Sbjct: 646 VAIIGEVGCGKSSLLNSIIG----EIHVTSGSITSYGSIAYVPQV 686
>07_01_0075 - 558829-560859
Length = 676
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK-----HFQTVYLTPQVRLCDCPG 379
T T+ G PNVGKSS MN + R V V TK H YL QV D PG
Sbjct: 168 TRTLLICGYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHADYKYLRYQV--IDTPG 224
Query: 380 LV 385
++
Sbjct: 225 IL 226
>06_01_0668 - 4882174-4884204
Length = 676
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK-----HFQTVYLTPQVRLCDCPG 379
T T+ G PNVGKSS MN + R V V TK H YL QV D PG
Sbjct: 168 TRTLLICGYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHADYKYLRYQV--IDTPG 224
Query: 380 LV 385
++
Sbjct: 225 IL 226
>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 209 NGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSR 307
NG+ VG VG+ GKSS++N++ ++V + R
Sbjct: 1292 NGSEKVGIVGRTGAGKSSMLNALF--RIVELER 1322
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/78 (32%), Positives = 34/78 (43%)
Frame = -2
Query: 533 RRCPGARCATAAVGLASHPSTLWRCTAP*AGLWDMNPSGSVWA*ALSTETPARDSRRDVP 354
R P A AA +S S +R A AG WD + A + +TP R+SRR
Sbjct: 15 RSAPRRAAAAAAKDASSFLSPRFRSAAAQAG-WD--EESLLHAALVVEDTPVRESRRRRR 71
Query: 353 AASGTRSGSAWCGPGSAT 300
A++ + S GS T
Sbjct: 72 ASTTSSSAGGGGSAGSNT 89
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 224 VGCVGQPNVGKSSLMNSVMGRK 289
VG VG PN GKS+L+ ++ K
Sbjct: 455 VGIVGAPNAGKSTLLTAISAAK 476
>02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089
Length = 224
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 557 RCPWATTCRRCPG-ARCATAAVGLASHP 477
RCP TC R PG C T+A G ++ P
Sbjct: 10 RCPAGNTCTRRPGDLGCNTSASGKSARP 37
>01_06_0002 - 25492807-25494675
Length = 622
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 418 PDGFISHSPAQGAVHRHKVLG-*EAKPTAAVA 510
PD + +PA+G HRH + +A+P AAVA
Sbjct: 110 PDPSVIGTPAEGPAHRHLLRAVSQARPRAAVA 141
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/78 (28%), Positives = 28/78 (35%)
Frame = -1
Query: 459 YGSLSWAMGYEPIRICMGLGTFDGNTSPGQSQRRTCGVRYTVWKCLVWPGVRDTETTLRP 280
YG+L + GY + F+G S GQ C T C V T T L P
Sbjct: 50 YGNL-YTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCP 108
Query: 279 ITEFMSEDLPTLGWPTQP 226
++ D GW P
Sbjct: 109 PNWALAND--DGGWCNPP 124
>10_07_0046 - 12338705-12339187
Length = 160
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 406 PRHFRRKHQPGTVAETYLRRQVH-GLEVLGVARGPR 302
P H+ K G V + LR +H G+ V+G GPR
Sbjct: 117 PEHYSYKRSDGAVCLSILRSPLHGGVFVIGRRGGPR 152
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 569 PSHRRCPWATTCRRCPGARCATAAVGLASHPSTLWRCT 456
PS R AT CR P C AAV + + L RC+
Sbjct: 39 PSRYRSYRATCCRAVPSLLCRVAAVCRLNLATALARCS 76
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 209 NGTLTVGCVGQPNVGKSSLMNSVMG 283
N + +G +G VGKS++MN + G
Sbjct: 90 NDFMVIGVIGPTGVGKSTIMNELYG 114
>01_04_0130 +
16462428-16463210,16463644-16463796,16464707-16464784,
16465229-16465348,16465419-16465585,16465683-16465710
Length = 442
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 220 DRRLRGPAQRRQVLAHELRD-GPQGGLRVADPGPHQALPDRVPDAAGTSLRLSR 378
+RRLRG + + +R G GGL P P A P +P A +L+R
Sbjct: 104 ERRLRGHLLNWPRVRNVVRQPGDDGGLLFPVPHPSLATPSSLPTAVARREKLAR 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,456,698
Number of Sequences: 37544
Number of extensions: 494982
Number of successful extensions: 1629
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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