BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0989 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11 SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 4e-11 SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 57 2e-08 SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06 SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05 SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 41 0.001 SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 33 0.19 SB_14566| Best HMM Match : F5_F8_type_C (HMM E-Value=2.8e-13) 32 0.57 SB_23988| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-10) 31 0.76 SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08) 31 0.76 SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 30 1.7 SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10) 30 2.3 SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 29 3.0 SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9) 29 4.0 SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_22529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 >SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 693 Score = 66.5 bits (155), Expect = 2e-11 Identities = 34/90 (37%), Positives = 49/90 (54%) Frame = +2 Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS 394 ++TVG VG PNVGKSS++NS+ + +V TPG TK Q V L ++L D PG+V + Sbjct: 455 SITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLLDSPGIVMDT 514 Query: 395 KVPRPIQILMGSYPIAQLREPYTAIRYLGE 484 IL I + +P+ +R E Sbjct: 515 GDSDAAIILRNCVKIENIEDPFPQLRQSSE 544 >SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 454 Score = 65.7 bits (153), Expect = 4e-11 Identities = 34/98 (34%), Positives = 56/98 (57%) Frame = +2 Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 397 ++VG +G PNVGKSS++N++ +KV V+ G TK +Q + L ++ L DCPG+V+P+ Sbjct: 168 ISVGLIGYPNVGKSSIINTLKAKKVCKVAPIAGETKVWQYITLMRRIYLVDCPGVVYPTG 227 Query: 398 VPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLR 511 IL G + ++E I + ER+ L + Sbjct: 228 DTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAK 265 >SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) Length = 299 Score = 56.8 bits (131), Expect = 2e-08 Identities = 25/40 (62%), Positives = 31/40 (77%) Frame = +2 Query: 221 TVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTV 340 T+G VG PNVGKSS +N+++ K V+VS TPG TKHFQ V Sbjct: 162 TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYV 201 >SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 342 Score = 48.4 bits (110), Expect = 6e-06 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Frame = +2 Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLT---PQVRLCDCPGLVF 388 L V +G+PN GKS+L+N ++G K+V+V+ P T+ T Q+ L D PGLV Sbjct: 40 LKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVT 99 Query: 389 PSKVPR 406 S+ R Sbjct: 100 QSEGKR 105 >SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 285 Score = 46.0 bits (104), Expect = 3e-05 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 9/59 (15%) Frame = +2 Query: 413 QILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHP------DN---DDTWSPRDICD 562 QIL G +PI+Q++EPYTA+ YL R L +L++ P DN D WS DIC+ Sbjct: 122 QILSGLFPISQVQEPYTAVGYLAARWPLVHMLKLVLPQDLQEDDNKEVDHKWSAWDICE 180 >SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) Length = 98 Score = 41.1 bits (92), Expect = 0.001 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +2 Query: 224 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325 V VG+PNVGKS+L+N ++GR+ V PG T+ Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTR 57 >SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) Length = 303 Score = 33.5 bits (73), Expect = 0.19 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = +2 Query: 206 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379 + G +G VG P+VGKS+L+ ++ G +V + T T Y +++L D PG Sbjct: 45 KTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG 104 Query: 380 LVFPSKV 400 ++ +K+ Sbjct: 105 IIEGAKM 111 >SB_14566| Best HMM Match : F5_F8_type_C (HMM E-Value=2.8e-13) Length = 241 Score = 31.9 bits (69), Expect = 0.57 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 523 GQRRHVVAQGHLRWLGEETQLSYSEICQIGHVQSSEQPAXDGRWTVEYA 669 GQ A +LR GE Q+ + ++ HV + +P D +W EY+ Sbjct: 173 GQHSGAWAASNLR-TGEYLQVDLGRVMRVTHVATQGRPQGDDQWVTEYS 220 >SB_23988| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-10) Length = 304 Score = 31.5 bits (68), Expect = 0.76 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 493 PTAAVAHRAPGQRRHVVAQG--HLRWLGEETQLSYSEICQIGHVQSSEQPAXDGRWTVEY 666 P A + P + +H+ A G L+ GE Q+ + I HV + +P +W EY Sbjct: 128 PHHARLNNQPVKEKHIGAWGAADLQTKGEYLQVDLGRVTWITHVATQGRPIEHAQWVTEY 187 Query: 667 A 669 + Sbjct: 188 S 188 >SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08) Length = 340 Score = 31.5 bits (68), Expect = 0.76 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Frame = +2 Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSR-----TPGHTKHFQTVYLTPQVRLCDCPG 379 T V VG+ VGKS L+N++MG VV + T +KH + + T +V + D PG Sbjct: 60 TFKVIVVGRTGVGKSHLVNTLMGEYVVEEGQDLDPCTSTVSKHEKRIGRT-RVTVWDSPG 118 Query: 380 L 382 L Sbjct: 119 L 119 >SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 621 Score = 30.7 bits (66), Expect = 1.3 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +2 Query: 233 VGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSKVPRP 409 +G P G + L V+ K + PG + F V + L DC +VFP+K PRP Sbjct: 129 LGNPGQGYTILTGDVVVSK--NPCFHPGDMRKFNAVDIPALYHLVDC--IVFPAKGPRP 183 >SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) Length = 957 Score = 30.3 bits (65), Expect = 1.7 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 158 AIIQKADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTP 313 A I + +T F E + + + VGQ N GKSSL+N ++G + + P Sbjct: 75 AFISEQETQKF--EEFVSKKAAILVVGQTNSGKSSLINELLGGTYLPTAEIP 124 >SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10) Length = 725 Score = 29.9 bits (64), Expect = 2.3 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +1 Query: 484 EAKPTAAVAHRAPGQRRHVVAQGHLR-WLGEETQLSYSEICQIGHVQSSEQPAXDGRWTV 660 E P A + P +H+ A R GE Q+ + I HV + +P + +W Sbjct: 22 EHNPHHARLNNQPMTGQHIGAWAPERKGKGEYLQVDVGRVTWITHVATQGRPQNNRQWVT 81 Query: 661 EYAF 672 EY+F Sbjct: 82 EYSF 85 >SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) Length = 869 Score = 29.5 bits (63), Expect = 3.0 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = +1 Query: 166 PEGRHHVLCSRAV-QERHADR--RLRGPAQRRQVLAHELRDGPQGGLRVADP 312 P G S A+ +E+ A R R GP+QR++ A DGP+GG V P Sbjct: 554 PRGGRSAEKSDAIHKEKKAPRGGRSGGPSQRKRWTAPAEEDGPRGGRAVYGP 605 >SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9) Length = 378 Score = 29.1 bits (62), Expect = 4.0 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +2 Query: 422 MGSYPIAQLREPYTAIRYLGERLNLPQLLRI-EHPDNDDTWS 544 +GS+ I+ + PYT Y+ P +R+ +HPD D+ S Sbjct: 149 VGSFEISHGKAPYTIAAYVPGTKGAPSAVRLFQHPDFDNPGS 190 >SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1092 Score = 28.7 bits (61), Expect = 5.3 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Frame = +2 Query: 248 VGKSSLMNSVMGRKVVSVSRTPGHTK----HFQTVYLTPQVRLCDCPGLVFPSKVPRPIQ 415 +G S L++SV S+S T F T TPQ L C GLV P P+ Sbjct: 554 LGSSMLLDSVFSWTTASISATDPIASLKPFSFATSCRTPQFSLNICLGLVQP-----PLS 608 Query: 416 ILMGSYPIAQLREPYTAIRY 475 L + LR + IR+ Sbjct: 609 RLRSCISVFPLRSDWNRIRF 628 >SB_22529| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 206 Score = 28.3 bits (60), Expect = 7.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = +2 Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVS---VSRTPGHTKHFQTVYLTPQVRLCDCPGLV 385 T+ V VG NVGK+S + + + S G++K + V LCD PG + Sbjct: 9 TIKVVFVGDKNVGKTSFLYAATTHNFPTGFIASIFDGYSKTMEIDGKRYTVLLCDTPGTM 68 Query: 386 FPSKVPR 406 P P+ Sbjct: 69 HPRIPPQ 75 >SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 555 Score = 28.3 bits (60), Expect = 7.0 Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK-----HFQTVYLTPQVRLCDCPG 379 T T+ G PNVGKSS MN V R V V TK H YL QV D PG Sbjct: 83 TRTLLVCGFPNVGKSSFMNKVT-RADVDVQPYAFTTKSLFVGHMDYKYLRWQV--VDTPG 139 Query: 380 LV 385 ++ Sbjct: 140 VL 141 >SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 305 Score = 27.9 bits (59), Expect = 9.3 Identities = 23/74 (31%), Positives = 30/74 (40%) Frame = -2 Query: 560 RRCPWATTCRRCPGARCATAAVGLASHPSTLWRCTAP*AGLWDMNPSGSVWA*ALSTETP 381 R PW PG R AA + HPS T A L NP + ++ T Sbjct: 21 RTLPWRFEIHHLPGLRSNYAADATSRHPSQ--SNTEEKAPLCSANPPDAA---EIALMTA 75 Query: 380 ARDSRRDVPAASGT 339 RDS +++ A S T Sbjct: 76 IRDSAQELGAISWT 89 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,980,504 Number of Sequences: 59808 Number of extensions: 535991 Number of successful extensions: 1445 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1278 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1444 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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