Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0989
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   4e-11
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)              57   2e-08
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)               41   0.001
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   33   0.19 
SB_14566| Best HMM Match : F5_F8_type_C (HMM E-Value=2.8e-13)          32   0.57 
SB_23988| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-10)            31   0.76 
SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)              31   0.76 
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)              30   1.7  
SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10)           30   2.3  
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                   29   3.0  
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      29   4.0  
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_22529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/90 (37%), Positives = 49/90 (54%)
 Frame = +2

Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS 394
           ++TVG VG PNVGKSS++NS+   +  +V  TPG TK  Q V L   ++L D PG+V  +
Sbjct: 455 SITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLLDSPGIVMDT 514

Query: 395 KVPRPIQILMGSYPIAQLREPYTAIRYLGE 484
                  IL     I  + +P+  +R   E
Sbjct: 515 GDSDAAIILRNCVKIENIEDPFPQLRQSSE 544


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 34/98 (34%), Positives = 56/98 (57%)
 Frame = +2

Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 397
           ++VG +G PNVGKSS++N++  +KV  V+   G TK +Q + L  ++ L DCPG+V+P+ 
Sbjct: 168 ISVGLIGYPNVGKSSIINTLKAKKVCKVAPIAGETKVWQYITLMRRIYLVDCPGVVYPTG 227

Query: 398 VPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLR 511
                 IL G   +  ++E    I  + ER+    L +
Sbjct: 228 DTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAK 265


>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
          Length = 299

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +2

Query: 221 TVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTV 340
           T+G VG PNVGKSS +N+++  K V+VS TPG TKHFQ V
Sbjct: 162 TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYV 201


>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +2

Query: 218 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLT---PQVRLCDCPGLVF 388
           L V  +G+PN GKS+L+N ++G K+V+V+  P  T+       T    Q+ L D PGLV 
Sbjct: 40  LKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVT 99

Query: 389 PSKVPR 406
            S+  R
Sbjct: 100 QSEGKR 105


>SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 9/59 (15%)
 Frame = +2

Query: 413 QILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHP------DN---DDTWSPRDICD 562
           QIL G +PI+Q++EPYTA+ YL  R  L  +L++  P      DN   D  WS  DIC+
Sbjct: 122 QILSGLFPISQVQEPYTAVGYLAARWPLVHMLKLVLPQDLQEDDNKEVDHKWSAWDICE 180


>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
          Length = 98

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +2

Query: 224 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 325
           V  VG+PNVGKS+L+N ++GR+   V   PG T+
Sbjct: 24  VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTR 57


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 206 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
           + G   +G VG P+VGKS+L+ ++ G   +V +   T   T      Y   +++L D PG
Sbjct: 45  KTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG 104

Query: 380 LVFPSKV 400
           ++  +K+
Sbjct: 105 IIEGAKM 111


>SB_14566| Best HMM Match : F5_F8_type_C (HMM E-Value=2.8e-13)
          Length = 241

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 523 GQRRHVVAQGHLRWLGEETQLSYSEICQIGHVQSSEQPAXDGRWTVEYA 669
           GQ     A  +LR  GE  Q+    + ++ HV +  +P  D +W  EY+
Sbjct: 173 GQHSGAWAASNLR-TGEYLQVDLGRVMRVTHVATQGRPQGDDQWVTEYS 220


>SB_23988| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-10)
          Length = 304

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 493 PTAAVAHRAPGQRRHVVAQG--HLRWLGEETQLSYSEICQIGHVQSSEQPAXDGRWTVEY 666
           P  A  +  P + +H+ A G   L+  GE  Q+    +  I HV +  +P    +W  EY
Sbjct: 128 PHHARLNNQPVKEKHIGAWGAADLQTKGEYLQVDLGRVTWITHVATQGRPIEHAQWVTEY 187

Query: 667 A 669
           +
Sbjct: 188 S 188


>SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)
          Length = 340

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +2

Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSR-----TPGHTKHFQTVYLTPQVRLCDCPG 379
           T  V  VG+  VGKS L+N++MG  VV   +     T   +KH + +  T +V + D PG
Sbjct: 60  TFKVIVVGRTGVGKSHLVNTLMGEYVVEEGQDLDPCTSTVSKHEKRIGRT-RVTVWDSPG 118

Query: 380 L 382
           L
Sbjct: 119 L 119


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 233 VGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSKVPRP 409
           +G P  G + L   V+  K  +    PG  + F  V +     L DC  +VFP+K PRP
Sbjct: 129 LGNPGQGYTILTGDVVVSK--NPCFHPGDMRKFNAVDIPALYHLVDC--IVFPAKGPRP 183


>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
          Length = 957

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 158 AIIQKADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTP 313
           A I + +T  F  E + +    +  VGQ N GKSSL+N ++G   +  +  P
Sbjct: 75  AFISEQETQKF--EEFVSKKAAILVVGQTNSGKSSLINELLGGTYLPTAEIP 124


>SB_7284| Best HMM Match : F5_F8_type_C (HMM E-Value=7.3e-10)
          Length = 725

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 484 EAKPTAAVAHRAPGQRRHVVAQGHLR-WLGEETQLSYSEICQIGHVQSSEQPAXDGRWTV 660
           E  P  A  +  P   +H+ A    R   GE  Q+    +  I HV +  +P  + +W  
Sbjct: 22  EHNPHHARLNNQPMTGQHIGAWAPERKGKGEYLQVDVGRVTWITHVATQGRPQNNRQWVT 81

Query: 661 EYAF 672
           EY+F
Sbjct: 82  EYSF 85


>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 166 PEGRHHVLCSRAV-QERHADR--RLRGPAQRRQVLAHELRDGPQGGLRVADP 312
           P G      S A+ +E+ A R  R  GP+QR++  A    DGP+GG  V  P
Sbjct: 554 PRGGRSAEKSDAIHKEKKAPRGGRSGGPSQRKRWTAPAEEDGPRGGRAVYGP 605


>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 422 MGSYPIAQLREPYTAIRYLGERLNLPQLLRI-EHPDNDDTWS 544
           +GS+ I+  + PYT   Y+      P  +R+ +HPD D+  S
Sbjct: 149 VGSFEISHGKAPYTIAAYVPGTKGAPSAVRLFQHPDFDNPGS 190


>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +2

Query: 248 VGKSSLMNSVMGRKVVSVSRTPGHTK----HFQTVYLTPQVRLCDCPGLVFPSKVPRPIQ 415
           +G S L++SV      S+S T          F T   TPQ  L  C GLV P     P+ 
Sbjct: 554 LGSSMLLDSVFSWTTASISATDPIASLKPFSFATSCRTPQFSLNICLGLVQP-----PLS 608

Query: 416 ILMGSYPIAQLREPYTAIRY 475
            L     +  LR  +  IR+
Sbjct: 609 RLRSCISVFPLRSDWNRIRF 628


>SB_22529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVS---VSRTPGHTKHFQTVYLTPQVRLCDCPGLV 385
           T+ V  VG  NVGK+S + +       +    S   G++K  +       V LCD PG +
Sbjct: 9   TIKVVFVGDKNVGKTSFLYAATTHNFPTGFIASIFDGYSKTMEIDGKRYTVLLCDTPGTM 68

Query: 386 FPSKVPR 406
            P   P+
Sbjct: 69  HPRIPPQ 75


>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 215 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK-----HFQTVYLTPQVRLCDCPG 379
           T T+   G PNVGKSS MN V  R  V V      TK     H    YL  QV   D PG
Sbjct: 83  TRTLLVCGFPNVGKSSFMNKVT-RADVDVQPYAFTTKSLFVGHMDYKYLRWQV--VDTPG 139

Query: 380 LV 385
           ++
Sbjct: 140 VL 141


>SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/74 (31%), Positives = 30/74 (40%)
 Frame = -2

Query: 560 RRCPWATTCRRCPGARCATAAVGLASHPSTLWRCTAP*AGLWDMNPSGSVWA*ALSTETP 381
           R  PW       PG R   AA   + HPS     T   A L   NP  +     ++  T 
Sbjct: 21  RTLPWRFEIHHLPGLRSNYAADATSRHPSQ--SNTEEKAPLCSANPPDAA---EIALMTA 75

Query: 380 ARDSRRDVPAASGT 339
            RDS +++ A S T
Sbjct: 76  IRDSAQELGAISWT 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,980,504
Number of Sequences: 59808
Number of extensions: 535991
Number of successful extensions: 1445
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)