Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0989
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.76 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 EGRHHVLCSRAVQERHADRRLRGPAQRRQVLAHELR 276
           +  HH L S AVQ+ H   + +   Q+RQ    E R
Sbjct: 145 QNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEER 180


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 43  SRSMQGHSQRRSGSFIV 93
           +R+ QGHS RRSG   V
Sbjct: 591 ARNKQGHSARRSGDVAV 607



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 470  RYLGERLNLPQLLRIEHPDNDDTWSPR 550
            RYLG+R+  P     E+  N +T   R
Sbjct: 1638 RYLGDRMQRPMKESQENQQNAETQRER 1664


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 43  SRSMQGHSQRRSGSFIV 93
           +R+ QGHS RRSG   V
Sbjct: 591 ARNKQGHSARRSGDVAV 607



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 470  RYLGERLNLPQLLRIEHPDNDDTWSPR 550
            RYLG+R+  P     E+  N +T   R
Sbjct: 1634 RYLGDRMQRPMKESQENQQNAETQRER 1660


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 287 KVVSVSRTPGHTKHF--QTVYLTPQVRLCDCPGLVF 388
           K   +SR    +KH   +  +++P+ +L  C GLVF
Sbjct: 742 KTNRISRIFNASKHSAKRPSFISPRSQLIICSGLVF 777


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,002
Number of Sequences: 438
Number of extensions: 4396
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)