Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0988
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 236 2e-63
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 233 1e-62
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 173 2e-44
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 149 5e-37
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 111 1e-25
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 70 3e-13
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 59 6e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 53 4e-08
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 4.1
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 5.4
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 7.2
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 236 bits (577), Expect = 2e-63
Identities = 127/202 (62%), Positives = 137/202 (67%)
Frame = +1
Query: 1 AQAXIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 180
AQA IEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLV
Sbjct: 276 AQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLV 335
Query: 181 GGSTRIPKVXKLLQDFFNGKELNKSINPXEXXXXXXXXXXXILHGDKXXXXXXXXXXXXX 360
GGSTRIP+V KL+ DFFNGKE KSINP E +L GD
Sbjct: 336 GGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVA 395
Query: 361 XXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPXXLIQVFEGERAMTKR*QLAS 540
GIETAGGVMT LIKRN YSDNQP LIQVFEGERA TK L
Sbjct: 396 PLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLG 455
Query: 541 VKFELTXIPPAPXGVPQIEVTF 606
KFEL+ IPPAP GVPQIEVTF
Sbjct: 456 -KFELSGIPPAPRGVPQIEVTF 476
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 233 bits (571), Expect = 1e-62
Identities = 125/202 (61%), Positives = 138/202 (68%)
Frame = +1
Query: 1 AQAXIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 180
AQA IEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLV
Sbjct: 276 AQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLV 335
Query: 181 GGSTRIPKVXKLLQDFFNGKELNKSINPXEXXXXXXXXXXXILHGDKXXXXXXXXXXXXX 360
GGSTRIP++ KL+ DFFNGKE KSINP E IL GD
Sbjct: 336 GGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVA 395
Query: 361 XXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPXXLIQVFEGERAMTKR*QLAS 540
GIETAGGVMT LIKRN Y+DNQP LIQVFEGERA TK L
Sbjct: 396 PLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLG 455
Query: 541 VKFELTXIPPAPXGVPQIEVTF 606
KFEL+ IPPAP GVPQIEVTF
Sbjct: 456 -KFELSGIPPAPRGVPQIEVTF 476
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 173 bits (420), Expect = 2e-44
Identities = 96/198 (48%), Positives = 121/198 (61%)
Frame = +1
Query: 13 IEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGST 192
IEI+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K++I DIVLVGGST
Sbjct: 312 IEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGST 371
Query: 193 RIPKVXKLLQDFFNGKELNKSINPXEXXXXXXXXXXXILHGDKXXXXXXXXXXXXXXXXX 372
RIPKV +LL+ FF GK+ +K INP E +L G++
Sbjct: 372 RIPKVQELLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGEE--GSDNIVLLDVIPLTL 428
Query: 373 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPXXLIQVFEGERAMTKR*QLASVKFE 552
GIET GGVMT LI RN DNQ LIQV+EGER +TK L KF+
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLG-KFD 487
Query: 553 LTXIPPAPXGVPQIEVTF 606
L IPPAP GVPQIEVTF
Sbjct: 488 LRGIPPAPRGVPQIEVTF 505
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 149 bits (360), Expect = 5e-37
Identities = 81/202 (40%), Positives = 110/202 (54%), Gaps = 1/202 (0%)
Frame = +1
Query: 4 QAXIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 183
Q +E+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA +HDIVLVG
Sbjct: 281 QTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVG 340
Query: 184 GSTRIPKVXKLLQDFFNGKELNKSINPXEXXXXXXXXXXXIL-HGDKXXXXXXXXXXXXX 360
GSTRIPKV +L+ DFF+G+ LNKSINP E +L +
Sbjct: 341 GSTRIPKVQRLVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVV 400
Query: 361 XXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPXXLIQVFEGERAMTKR*QLAS 540
G+ G V + RN +DNQ V++GER +
Sbjct: 401 PLSLGVAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQGERVNCAENEPLG 460
Query: 541 VKFELTXIPPAPXGVPQIEVTF 606
+F+LT IPP P G ++E TF
Sbjct: 461 -EFQLTGIPPMPRGQAELEATF 481
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 111 bits (266), Expect = 1e-25
Identities = 66/183 (36%), Positives = 98/183 (53%)
Frame = +1
Query: 58 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVXKLLQDFFNG 237
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + ++ F
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFK- 401
Query: 238 KELNKSINPXEXXXXXXXXXXXILHGDKXXXXXXXXXXXXXXXXXGIETAGGVMTTLIKR 417
+E KS+NP E +L G GIET GGV T LI R
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINR 457
Query: 418 NXXXXXXXXXXXXXYSDNQPXXLIQVFEGERAMTKR*QLASVKFELTXIPPAPXGVPQIE 597
N +D Q I+VF+GER + + +L F+LT I PAP G PQIE
Sbjct: 458 NTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVRDNKLIG-NFQLTGIAPAPKGQPQIE 516
Query: 598 VTF 606
V+F
Sbjct: 517 VSF 519
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/90 (34%), Positives = 57/90 (63%)
Frame = +1
Query: 1 AQAXIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 180
++A I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L
Sbjct: 312 SEAIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILF 371
Query: 181 GGSTRIPKVXKLLQDFFNGKELNKSINPXE 270
GG++RIP + L D+ + +++K++N E
Sbjct: 372 GGASRIPFIQSTLADYVSSDKISKNVNADE 401
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 58.8 bits (136), Expect = 6e-10
Identities = 31/90 (34%), Positives = 52/90 (57%)
Frame = +1
Query: 1 AQAXIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 180
A A + ++ + ID + I R+ FEEL L P+EK+L A + K ++ I +V
Sbjct: 284 ANAPLNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMV 343
Query: 181 GGSTRIPKVXKLLQDFFNGKELNKSINPXE 270
GG TR+P V +++ ++F GK L+ ++N E
Sbjct: 344 GGCTRVPIVKEVIANYF-GKGLSFTLNQDE 372
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/83 (28%), Positives = 47/83 (56%)
Frame = +1
Query: 7 AXIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGG 186
A +DSL +GIDF++SI R R++ + + V +++ A M+ I +++L GG
Sbjct: 304 ASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGG 363
Query: 187 STRIPKVXKLLQDFFNGKELNKS 255
++ PK+ L++ F + + +S
Sbjct: 364 ASNTPKLTSLMESIFPEQTIIRS 386
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 166 RGFEPYPSWHHGETSPLAP 110
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 25 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 183
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 92 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWW 181
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,913
Number of Sequences: 5004
Number of extensions: 43961
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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