Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0987
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.2  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   5.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 279 PSSLSPTPIQL*RCALREHLRCDPVPRDP 365
           P + +PT   + RCALR+H + +  PR P
Sbjct: 94  PQTSAPTGPPIVRCALRKH-KPNRKPRTP 121


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 280 GSPLCSPRRCPANACPLYRWIRQRPGYP 197
           G+P+C       NA  L +W   + G+P
Sbjct: 324 GNPICVQIPWDKNAEALAKWANGQTGFP 351


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 277 SPLCSPRRCPANACPLYRWIRQRPG 203
           SP+    R P   C +  W ++RPG
Sbjct: 513 SPISKKVRPPQVLCYITSWSQKRPG 537


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 267 HRGEPSSLSPTPIQ 308
           H GEP+ L+P  IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 321 ALREHLRCDPVPRDPLPEG*RWNASGLPAGEEXHHPRHQ 437
           A R+ ++  P    PLP    +N    P  ++ HHP HQ
Sbjct: 16  AARDFVQGYPASVQPLPR--HFN----PPSDKLHHPIHQ 48


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 286 DDGSPLCSPRRCPANACPLYRWIRQRPG 203
           ++G+  C    CP   CP    + + PG
Sbjct: 699 ENGNNKCFTMECPQVTCPDNMKLEKVPG 726


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 301 GVGDNDDGSPLCSPRR 254
           G+ D  + +PL SPRR
Sbjct: 103 GMHDQQNNNPLPSPRR 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,361
Number of Sequences: 336
Number of extensions: 3870
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)