Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0987
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    29   0.48 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    29   0.85 
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   2.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.4  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    26   4.5  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   4.5  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    26   6.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   7.9  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 250 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKXGIIP 429
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 430 GIK----VDKGVVPLFGSEDECTTP 492
            ++    +  GV P    +   +TP
Sbjct: 552 PLREQTSITSGVPPSNRLKKHVSTP 576


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 566 ATPLGEVAAGPSCTGRSAGRGRPDPGVVHSSSDPNSGTTPLSTLMPGMMPFFSS 405
           A P+  V  GP   G +     P PG+V +S  P + T P + +MP  +PF+ +
Sbjct: 273 AMPMMNVPMGP---GGAPLVPPPPPGMVMASPSPAAATIPGAPVMPN-IPFYQT 322


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 433 IKVDKGVVPLFGSEDECTTPGSGRPRPALRPVQEGPAATSPSGVA 567
           I ++KG++P + SE+E T P          PV E  ++T P+ +A
Sbjct: 24  IDLEKGLLPEYNSEEEGTLPLYSDISKLANPVPE-DSSTGPTEIA 67


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 136 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 300
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 433 IKVDKGVVPLFGSEDECTTPGSGRPRPALRPVQEGPAATSPSGVA 567
           I ++KG++P + SE+E   P          PV E  ++T P+ +A
Sbjct: 24  IDLEKGLLPEYNSEEEGALPPYSDISKLANPVPE-DSSTGPTEIA 67


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 572 QHATPLGEVAAGPSCTGRSAGRGRPDPGVVHSSSDPNSGTTPLST 438
           QH   +G+ A  P+    S+    P    V S +D N+ T PLST
Sbjct: 183 QHQVLVGQTAI-PTSEASSSINNTPLQAPVSSFADQNAFTNPLST 226


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -3

Query: 590 GVAADLQHATPLGEVAAGPSCTGRSAGRGRPDPGVVHSSSDPNSGTTPLSTLMPGMMPFF 411
           G  + L  +T  G + +  S +  S+    P      SSS  +S +TP+S+ +   +   
Sbjct: 119 GSDSTLAASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSI--- 175

Query: 410 SSRETRGVPSSA 375
           SS  +  V SS+
Sbjct: 176 SSSASSSVSSSS 187


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 523 PVQEGPAATSPSGVAC*RSAAT-PPRTKLXRKTANVLARYAXIXSKASASCRLSSPXVLP 699
           P  E PAA +P   +  +SA+T PPRT   R+ ++V +  A +   AS + + +SP VLP
Sbjct: 191 PDAEQPAA-APVKKSKQKSASTAPPRT---RRNSSVSSTSASVA--ASTAPKAASPAVLP 244


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -3

Query: 593 GGVAADLQHATPLGEVAAGPSCTGRSAGRGRPDPGVVHSSSDP-NSGTTPLSTLMPGMMP 417
           GG      +ATP    ++ PS    SA      P   +S S P +S + P ++ +P    
Sbjct: 67  GGTPTYYGYATPTS--SSEPSIFSESA-----TPSETNSYSSPVSSYSDPATSQLPSSTS 119

Query: 416 FFSSRETRGVPSS 378
           FFS   +   PSS
Sbjct: 120 FFSPTSSEYTPSS 132


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 433 IKVDKGVVPLFGSEDECTTPGSGRPRPALRPVQEGPAATSPSGVA 567
           I ++KG +P + SED  T P        ++ V E  ++T P+ +A
Sbjct: 23  IDLEKGPLPEYNSEDGSTLPPYSEIWKYIKTVSE-DSSTGPTEIA 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,783
Number of Sequences: 5004
Number of extensions: 58932
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)