Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0986
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CRS2 Cluster: Chromosome undetermined scaffold_25, wh...    43   0.006
UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10; Bur...    34   3.8  
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshime...    33   8.7  

>UniRef50_A0CRS2 Cluster: Chromosome undetermined scaffold_25, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_25,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 176

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +3

Query: 63  IEKKXQKIPLIR*YLLSLCACHRFLISGNDVKV--VVASLYPTALSDASEVFRALSGFKV 236
           + K  QK+PLIR + L L    R+ I+ + + V  ++AS     ++D S +++ + GFK+
Sbjct: 10  LAKLMQKVPLIREHRLKLGQQVRYPITQSPMNVTPIMASRQAETITDTSTIYQLVPGFKI 69

Query: 237 RNRSLYR 257
            N+S YR
Sbjct: 70  NNQSTYR 76


>UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10;
           Burkholderia|Rep: ATP/GTP-binding site motif A -
           Burkholderia cenocepacia MC0-3
          Length = 383

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = -3

Query: 307 PQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 128
           PQ D V DT++ +PD +   +L R+  PL A       D AV           L E    
Sbjct: 10  PQTDRVADTMSVLPDDASVTELMRSFAPLLA-------DEAVTELVINRPQRILTETHRG 62

Query: 127 WHAHKLNK--YQRIKGIFCXFFSIFNLETNEE*P 32
           W AH L +  ++R+        ++ N   + E P
Sbjct: 63  WQAHDLPELDFERLMAFAVAIATLTNQSVSTEHP 96


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -3

Query: 244 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 104
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


>UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshimeri
           serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
           /SLCC5334)
          Length = 42

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -1

Query: 495 KFSVMTILKLMRSRKPTNIFLKKTIIFD 412
           K S++  +KL++S+K TN+ LK+ II+D
Sbjct: 14  KRSILPYIKLLKSKKVTNLHLKERIIYD 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,798,172
Number of Sequences: 1657284
Number of extensions: 10441364
Number of successful extensions: 23000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22997
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)