Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0986
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    29   3.5  
01_07_0039 - 40667598-40669880                                         28   8.0  

>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 474 LKLMRSRKPTNIFLKKTIIFDSLVKENTYKSTSNQECY*NGSVLNY*NSRKVHPTLHNLT 295
           +KLM S  P   +L    I D+L+K N   ++ ++    +  + N   S    P LHNL 
Sbjct: 347 VKLMESTSPDG-YLSGARILDTLIKFNRDDASGSELPGQSMQIYNMIGSASSSPILHNLV 405

Query: 294 Q 292
           Q
Sbjct: 406 Q 406


>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 309 LHNLTQCVTR*HTYRTDRDITTCFEL*IRLKPETLQMHRTARS 181
           +HNL     R  ++R   D+ T FEL     PE LQ   T+ S
Sbjct: 458 IHNLLMFSHRIPSFRFTCDVGTVFELEHSAVPENLQYENTSAS 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,793
Number of Sequences: 37544
Number of extensions: 260782
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)