Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0983
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1085 + 33989863-33991179 33 0.14
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 29 2.3
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 28 3.0
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 3.0
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 4.0
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 4.0
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 27 5.3
06_01_1164 + 9921555-9922661 27 7.0
02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989 27 7.0
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 27 7.0
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 27 7.0
10_08_0416 + 17770384-17770992 27 9.2
10_01_0335 + 3695427-3695483,3695564-3695945,3696191-3696258 27 9.2
06_01_0649 + 4698384-4698780,4699047-4699144,4699673-4699697,469... 27 9.2
03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570 27 9.2
>02_05_1085 + 33989863-33991179
Length = 438
Score = 32.7 bits (71), Expect = 0.14
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Frame = +1
Query: 16 RSPLNIMELKY-WWWMMXXXXXXXXXXXXXDGEV-WEENDHEVLIRSARGAK-------- 165
RSP I+ LK+ WWWMM DG + + E DH + + R A+
Sbjct: 208 RSP-RIVSLKHHWWWMMNTVWDGLDETRDFDGHILFIEEDHYIFPNAYRNAQLLVDLKPS 266
Query: 166 NREACRYVRGAWSECDSKTNIRSRKLTLKKGD---PANCEVVKTIQKKCKRTCRYEKSSW 336
C + A S+ +K + K G+ N V + I K K+ C +++ +W
Sbjct: 267 KCPQCYAINLAPSDVKAKGEGWESLVAEKMGNIGYAFNRTVWRKIHAKAKQFCTFDEYNW 326
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 177 CLSIFCASCASNENFMVILLPHLAICGNYRYR 82
C S+FC+SC SN+ M L P N RYR
Sbjct: 635 CGSMFCSSCTSNKITMAALAPDT----NRRYR 662
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +1
Query: 211 DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 390
D + ++R R+L + A E ++T++ C + + + S CS+ G+M+R + + SN
Sbjct: 249 DERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSN 307
Query: 391 S 393
+
Sbjct: 308 A 308
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 133 HGHSPPTPRHLRQLPLPIRGPVLP 62
H H P PRH LPLP+ P P
Sbjct: 747 HQHQPYQPRHTDALPLPLPLPPPP 770
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 121 PPTPRHLRQLPLPIRGP 71
PP PR R LP+P RGP
Sbjct: 50 PPPPRPRRALPIPGRGP 66
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 283 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRK 423
KT++ + + +K S+ +G+ SR KL +SDS D +++K
Sbjct: 214 KTLKDDRRHAKKGKKDKGSDAKSHGKSSRKIKLGHDSDSDHDDNKKK 260
>11_01_0346 -
2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 257 AIRLTVKLLKPSRKSARELAAMKSHLGANAASMGRCPG 370
A+ L +K+ K SR SAR+LAA S L A C G
Sbjct: 46 ALHLLIKIPK-SRASARQLAAFNSPLQLAAVVFNGCLG 82
>06_01_1164 + 9921555-9922661
Length = 368
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 272 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAK 424
+++ P R+ R + ++ H+ A AAS G G +RL +V A+
Sbjct: 279 LRVAGPVRRPLRRVRQLREHVAAAAASRGGAGGRAGAYRRGVRLGRRVVAR 329
>02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989
Length = 246
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 84 GSGSCRRWRGVGG 122
G G CRRW G GG
Sbjct: 65 GGGQCRRWPGCGG 77
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 272 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGP 373
+ LL+PS +A A+ +SHL A AS GP
Sbjct: 322 IDLLQPSTSTASTFASSQSHLKAITASKRMKSGP 355
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 220 TNIR--SRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGE 360
T+IR +RKL++ D C T+ K ++ R +S + CS GE
Sbjct: 526 TDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSCSGRGE 574
>10_08_0416 + 17770384-17770992
Length = 202
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -3
Query: 133 HGHSPPTPRHLRQLP--LPIRGPVLP 62
HGH+ P HL +P + IR P LP
Sbjct: 82 HGHAHPNLHHLHSIPANVQIRRPELP 107
>10_01_0335 + 3695427-3695483,3695564-3695945,3696191-3696258
Length = 168
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/91 (18%), Positives = 35/91 (38%)
Frame = +1
Query: 163 KNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSE 342
K + Y+ W E T + + + L + + V + ++C C + S +
Sbjct: 52 KEAASTLYMTTGWKEFAEATGLETGETILFRMSSRSKARVMLLNRQCLIRCPVKTPSTTS 111
Query: 343 CSINGEMSRTDKLKSNSDSTCDQSRRKTPXM 435
N +S +D+L S S + + P +
Sbjct: 112 SDKNRSLSPSDQLTRASTSAHPSTSKSIPPL 142
>06_01_0649 +
4698384-4698780,4699047-4699144,4699673-4699697,
4699809-4699929,4700022-4700156,4700392-4700602
Length = 328
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 33 HGAQVLVVDDGRTGPLIGSGSCRRWRGVG 119
H +VL +++ T L G+G+CRR + +G
Sbjct: 86 HDPEVLPLEEVATKSLNGNGACRRGKPLG 114
>03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570
Length = 179
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 127 HSPPTPRHLRQLPLPIR 77
H P+PRHLR LP PIR
Sbjct: 21 HLHPSPRHLRPLP-PIR 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,727
Number of Sequences: 37544
Number of extensions: 250227
Number of successful extensions: 852
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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