Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0983
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 38 0.003
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40) 31 0.33
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.0
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 30 1.0
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 27 5.4
SB_14240| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_2148| Best HMM Match : WSC (HMM E-Value=0.039) 27 5.4
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 7.2
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_14241| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8) 27 7.2
SB_11776| Best HMM Match : CRAL_TRIO_N (HMM E-Value=8.5) 27 9.5
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 38.3 bits (85), Expect = 0.003
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +1
Query: 172 EACRYVRGAWSECDSK--TNIRSRKLTLKKGD-PANCEVVKTIQKKCK-RTC-RYEKSSW 336
E R+ GAWSEC S + +R+R ++ K D N E K+C C + W
Sbjct: 53 ECPRWTAGAWSECSSTCGSGVRTRFVSCKPRDGTCNSEDKPDAYKECDVMECPTWSVGQW 112
Query: 337 SECSIN-GEMSRTDKLKSNSDSTCDQSRRKTPXML 438
S CS+ G R + + CD+ R+ + L
Sbjct: 113 SSCSVTCGVGRRLRSVVCSIHGKCDKQRQPSSSTL 147
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 31.9 bits (69), Expect = 0.25
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Frame = +1
Query: 115 WE-ENDHEVLIRSARGAKNREACRYVRGAWSECDS---KTNIRSRKLTLKKG--DPANCE 276
W+ E+D EVL+R G+ N C VRG EC + + + L +G + C
Sbjct: 619 WKLEDDKEVLVR---GSMNECQCVLVRGLMHECQCVLVRGTMNECQCVLVRGTMNECQCV 675
Query: 277 VVKTIQKKCKRTCRYEKSSWSEC 345
+V+ + +C+ C + S +EC
Sbjct: 676 LVRGLMHECQ--CVLVRGSMNEC 696
>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
Length = 1265
Score = 31.5 bits (68), Expect = 0.33
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 274 EVVK--TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTP 429
E+VK + K+ K E++ SE ++NG S ++LKS+ +T DQS + P
Sbjct: 535 EMVKQSAVVKETKPNNVIEETVESETTVNGLESDPERLKSSQGTTVDQSVKDVP 588
>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1219
Score = 29.9 bits (64), Expect = 1.0
Identities = 25/96 (26%), Positives = 41/96 (42%)
Frame = +1
Query: 115 WEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 294
W+E+ H + R + AK + + ++EC S N + K D NC T
Sbjct: 100 WKESIHSLACRCSAAAKKKGYSFFAIQFYAECWSGPN-TADFAKHGKADDKNCFSELTTD 158
Query: 295 KKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDST 402
K + C +K S EC + + K+K +S S+
Sbjct: 159 VKNRPPC--DKKSEDECVGIDDTNYVYKVKEDSASS 192
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 262 PANCEVVKTIQKKC-KRTCRYEKSSWSE 342
P+ +V K + +KC K TCR+ K +WS+
Sbjct: 471 PSGNKVFKCLNQKCGKETCRHCKENWSD 498
>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 304 KRTCRYEKSSWSECSINGEMSRTDKLKSNSD 396
K C YE S + +I GEM+ D+ K N D
Sbjct: 729 KHVCAYEISGMTRGTIGGEMTVNDEYKYNDD 759
>SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 106 GEVWEENDHEVLIRSARGAKNR 171
G WEEND E LI A+GA+NR
Sbjct: 93 GRRWEENDKEGLI--AQGARNR 112
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 259 RPFSESTSLSGYSFWSHIRSKHRAHIDMPLYXXXXXXXXXXLHGHSPP 116
RPF+ TS SG S+W S H D P + H+PP
Sbjct: 446 RPFTACTSPSGISYWQQGHSIH----DTPCHALTKRLMVLDHAFHTPP 489
>SB_14240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 269 LAGSPFFRV-NFLERIFVLESHSLQAPRTYRHASLFFAPL 153
+ SP R + + + + +S LQAPR Y H + +PL
Sbjct: 46 ITDSPLLRTARYCKHLVITDSPLLQAPRFYEHPVITDSPL 85
>SB_2148| Best HMM Match : WSC (HMM E-Value=0.039)
Length = 159
Score = 27.5 bits (58), Expect = 5.4
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 115 WEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 294
W+E+ H + R + AK + + ++EC S N + K D NC T
Sbjct: 63 WKESIHSLACRCSAAAKKKGYSFFAIQFYAECWSGPN-TADFAKHGKADDKNCFSELTTD 121
Query: 295 KKCKRTCRYEKSSWSEC 345
K + C +K S EC
Sbjct: 122 VKNRPPC--DKKSEDEC 136
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 145 RSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYE 324
++ RG ++ C+ + A + C K S T ++G C++ ++ CK+TC+
Sbjct: 354 KTLRGDSCKQECKTAKCALT-CKGKGTYGSCDQTCERG---KCQLRCNTRENCKQTCKEG 409
Query: 325 KSSWSEC 345
K C
Sbjct: 410 KCLTMSC 416
>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/55 (21%), Positives = 23/55 (41%)
Frame = +1
Query: 250 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQS 414
+K D E +Q ++ C SW EC+ +G+ + ++ D D +
Sbjct: 17 RKDDFTEDEYFSILQDLQQKYCPSMSESWQECNQDGDRNNAEQRVKKEDLVLDDN 71
>SB_14241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.1 bits (57), Expect = 7.2
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = -2
Query: 371 VLDISPLMLHSLQDDFS*RQVLLHFFWMVLTTSQLAGSPFFRVNFLERIFVLESHSLQAP 192
V+ + L+ H D S Q ++ V+T + L SP + + + ++ LQAP
Sbjct: 25 VIASTSLLRHPAVTDTSLLQAPRYYGQPVITDTSLLRSP----RYYGQPAITDTSLLQAP 80
Query: 191 RTYRHASLFFAPL 153
R Y H + +PL
Sbjct: 81 RYYEHPVITDSPL 93
>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
Length = 520
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 160 AKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWS 339
A+NRE R + C K NI R L + DP N + T++ ++E ++W+
Sbjct: 352 ARNREILRSLFKTIIFC-GKNNIPLRGL--RDSDPTNAALAATLEDISMNRHKHENTNWN 408
Query: 340 ECS 348
S
Sbjct: 409 PTS 411
>SB_11776| Best HMM Match : CRAL_TRIO_N (HMM E-Value=8.5)
Length = 298
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 272 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIS*SP 388
++L K +++SA+E ++ AN S+GR GP + P
Sbjct: 176 LQLSKKNKQSAQEHPSVVDDYLANEVSLGRVAGPFAYPP 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,353
Number of Sequences: 59808
Number of extensions: 283678
Number of successful extensions: 811
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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