Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0983
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.50 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 265 PDRPFSESTSLSGYSFWSHIRSKHRAHIDMPL 170
           PD+P S S S +  S  S  RS+ +   DMP+
Sbjct: 589 PDKPASSSASSAPTSVCSSPRSEDKEVEDMPV 620


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 57  PPPVLELHDVQRR 19
           PPP L+ HD  R+
Sbjct: 322 PPPNLDYHDYSRQ 334


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 181 RYVRGAWSECDSKTNIRSRKLTL 249
           RY+  A+     KTN+   K TL
Sbjct: 12  RYITAAFPSACGKTNLAMMKPTL 34


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 232 SRKLTLKKGDPANCEVVKTIQKKC 303
           S +LT+K G P N E      ++C
Sbjct: 121 SSRLTIKAGCPMNLENFPMDTQRC 144


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +1

Query: 37  ELKYWWWMM 63
           E+  WWW M
Sbjct: 362 EMNKWWWNM 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,796
Number of Sequences: 438
Number of extensions: 2843
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)