Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0983
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai... 29 1.1
At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containi... 29 1.9
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 28 2.5
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila... 28 2.5
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila... 28 2.5
At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At2g22795.1 68415.m02704 expressed protein 28 3.4
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 27 4.4
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family... 27 5.9
At2g05320.1 68415.m00560 beta-1,2-N-acetylglucosaminyltransferas... 27 5.9
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 27 5.9
>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 263
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 310 TCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTP 429
+CR S W C+ N +S + ++ N DS KTP
Sbjct: 17 SCRAADSIWQLCNTNSNISASSQVSKNIDSLLATLVSKTP 56
>At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 599
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 118 EENDHEVLIRSARG-AKNREACRYV 189
++N + VLIR G K+REACRY+
Sbjct: 507 DDNSYTVLIRGLIGEGKSREACRYL 531
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 220 TNIRSRKLTLKKGDPANCEVVKTIQKK 300
T ++RK TL+ G+PA CE KT + K
Sbjct: 426 TRSKARKSTLESGEPAKCE--KTFEAK 450
>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform b [Chlamydomonas
reinhardtii] GI:15384279; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 279
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 205 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 384
+ D KT IRS K L GD + ++T+ CK K S++ +++ ++K
Sbjct: 72 QADVKTLIRSYKQALLNGDETSVTEIETM--FCKIEKEKNKMDQKVLSLSMKIASEKEMK 129
Query: 385 SNSDSTCDQSRRK 423
+ D +R+K
Sbjct: 130 IRLQADFDNTRKK 142
>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform b [Chlamydomonas
reinhardtii] GI:15384279; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 279
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 205 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 384
+ D KT IRS K L GD + ++T+ CK K S++ +++ ++K
Sbjct: 72 QADVKTLIRSYKQALLNGDETSVTEIETM--FCKIEKEKNKMDQKVLSLSMKIASEKEMK 129
Query: 385 SNSDSTCDQSRRK 423
+ D +R+K
Sbjct: 130 IRLQADFDNTRKK 142
>At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 147
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 21 SAEHHGAQVLVVDDGRTGPLIG-SGSCRRWRGVGGE*P*SSHSXXXXXXXXXGMSICARC 197
S +HG D G ++G S SC RW G E P + G+ +CA C
Sbjct: 43 SRSNHGVNTFGSYDEIFGLVLGNSSSCTRWLNAGEELPVVEFT--AEEMMERGLVVCAIC 100
Query: 198 LERM 209
E +
Sbjct: 101 REEL 104
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 205 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 384
+ D K NI + KGD A+ EVV ++K + EK + I E +K
Sbjct: 287 DIDEKANIEEARENNYKGDDASSEVVHESEEKTSESENSEKVE-DKSGIKTEEVEDSVIK 345
Query: 385 SNSDSTCD 408
S +T D
Sbjct: 346 SVLPNTTD 353
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 193 GAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRT 372
G W D K+N+ + K T + G C VV +Q K E + CSIN +
Sbjct: 423 GCWE--DKKSNVTACKDTFR-GRVCECPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWS 479
Query: 373 DKLKSNSDSTC 405
+ K + S C
Sbjct: 480 ETKKGLTFSAC 490
>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
protein common family member:At2g33490 [Arabidopsis
thaliana]
Length = 608
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 181 RYVRGAWSECDSKTNIRSRKLTLKKGDP 264
RYV +CD K N+ L +KG P
Sbjct: 129 RYVEDMKQQCDGKRNVYEMSLVKEKGRP 156
>At2g05320.1 68415.m00560 beta-1,2-N-acetylglucosaminyltransferase
II identical to beta-1,2-N-acetylglucosaminyltransferase
II GI:10183645 from [Arabidopsis thaliana]
Length = 430
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 16 RSPLNIMELKY-WWWMMXXXXXXXXXXXXXDGEV-WEENDH 132
RSP I+ LK+ WWWMM +G + + E DH
Sbjct: 199 RSP-KIVSLKHHWWWMMNTVWDGLEETKGHEGHILFIEEDH 238
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 27.1 bits (57), Expect = 5.9
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Frame = +1
Query: 109 EVWEENDHEVLIRSARGAKNREACRYVRGAWSECD----SKTNIRSRKLTLKKGDPANCE 276
+V + N V+ S+ G + + R E D S ++K T+KK +PA +
Sbjct: 393 KVGQTNQSVVISLSSSGRARTGSRKRSRTKMEETDHDVSSVATQPAKKQTVKKTNPAKED 452
Query: 277 VVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 384
+ K+ KK + + KSS E + NG +++T K
Sbjct: 453 LTKSNVKKHEDGIKTGKSSKKEKADNG-LAKTSAKK 487
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,653,464
Number of Sequences: 28952
Number of extensions: 190046
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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