Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0982
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   1.1  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    25   3.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   7.9  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    24   7.9  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 186 LPMLDRPGWFGSPRPSFRLSD*D*VRQWLKEVRVR-FKYKQFNIVP 52
           L  L R  +FG P P   L D    ++W    ++R  KY   + +P
Sbjct: 57  LQKLPRTLYFGLPLPDSELDDTGEAKRWFPRNKIRTAKYTPIDFIP 102


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 215 SNEILPPMSCFLCWTDQVGSDLHAPVSDYPIEIEFV 108
           S+  + P       T+ +G+DLH  ++  P+E +F+
Sbjct: 83  SDIFISPFEDIYFVTELLGTDLHRLLTSRPLETQFI 118


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 103 PLTNSISIG*SETGAWRSEPTWSV 174
           P  N ISI  +ET A+ S   WSV
Sbjct: 813 PKINGISISNNETSAYLSFLLWSV 836


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 111 RQWLKEVRVRFKYKQFNIV 55
           +QW+  + V F+  QFNIV
Sbjct: 63  QQWVYPINVSFRDYQFNIV 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,979
Number of Sequences: 5004
Number of extensions: 20969
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)