Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0982
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 31 0.20
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 31 0.26
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 31 0.26
10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915... 31 0.34
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 31 0.34
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 27 4.2
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 26 7.4
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 26 9.8
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 26 9.8
>01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 31.5 bits (68), Expect = 0.20
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -3
Query: 291 VVTVAHRLPTVIEALIIIAFVEIRELE*D 205
V+T+AHR+PTVI++ +++ E + LE D
Sbjct: 1333 VITIAHRIPTVIDSDLVLVLGEGKILEFD 1361
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 31.1 bits (67), Expect = 0.26
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -3
Query: 291 VVTVAHRLPTVIEALIIIAFVEIRELE*D 205
V+TVAHR+PTV++ +++A + + +E D
Sbjct: 1420 VITVAHRIPTVMDCTMVLAMSDGKMVEYD 1448
>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 31.1 bits (67), Expect = 0.26
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -3
Query: 291 VVTVAHRLPTVIEALIIIAFVEIRELE*D 205
V+TVAHR+PTV++ +++A + + +E D
Sbjct: 1417 VITVAHRIPTVMDCTMVLAMSDGKVVEYD 1445
>10_08_0791 -
20590744-20591211,20591379-20591439,20591525-20591592,
20592015-20592188,20592291-20592331,20592571-20592620,
20593083-20593171,20593250-20593324,20593631-20593719,
20593895-20593955,20594111-20594227,20594465-20594667,
20594785-20594842,20594951-20595103
Length = 568
Score = 30.7 bits (66), Expect = 0.34
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -3
Query: 294 LVVTVAHRLPTVIEALIIIAFVEIRELE*DFASYVLLPMLDRPGWFGSPR 145
LVVT+A + T ++A+I + VEI+E ++ + D WFG PR
Sbjct: 311 LVVTLA--VGTKLQAIIAMMAVEIKERHTVIQGMPVVKLSDEHFWFGKPR 358
>04_04_0961 + 29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 30.7 bits (66), Expect = 0.34
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -3
Query: 291 VVTVAHRLPTVIEALIIIAFVEIRELE*D 205
V+T+AHR+ TVI++ +I+ F E R +E D
Sbjct: 1132 VLTIAHRIHTVIDSDLILVFSEGRIIEYD 1160
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 291 VVTVAHRLPTVIEALIIIAFVEIRELE*D 205
V T+AHR+PTVI++ +++ + + E D
Sbjct: 1450 VCTIAHRIPTVIDSDLVLVLSDGKIAEFD 1478
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 79 ESDSDLFEPLTNSISIG*SETGAWRSEPT 165
ESD D F+PL+ S S+G + + RS P+
Sbjct: 379 ESDKDYFDPLSPS-SVGTKRSHSMRSTPS 406
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 183 PMLDRPGWFGSPRPSFRLS 127
P D PGW +PR S R+S
Sbjct: 525 PTRDAPGWTQAPRHSIRVS 543
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 201 ASYVLLPMLDRPGWFGSPRPS 139
+SY+++PM + P G PRP+
Sbjct: 47 SSYLIVPMSEPPAQVGVPRPN 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,274,055
Number of Sequences: 37544
Number of extensions: 139247
Number of successful extensions: 352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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