Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0982
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        27   3.3  
SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)                       27   5.8  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.7  
SB_15187| Best HMM Match : PilN (HMM E-Value=7.5)                      26   7.7  
SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)                 26   7.7  

>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -2

Query: 223  KRTRMRFCLLCPASYVGPTRLVRISTPQFPTIRLRLSSSVAQRGQSQIQI 74
            K+     CL CP  Y+G   L R+     P  +++ ++++    +S  +I
Sbjct: 1612 KQIEGSICLQCPDGYMGDGELCRVIASIAPEFQVQPANNITTTTESAFRI 1661


>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
          Length = 392

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 111 ELNLNRIVGNWGVEIRTNLVG 173
           +LN+NR   +WG + R N+VG
Sbjct: 323 KLNINRKAMSWGYQRRLNIVG 343


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 34  YHRIVLRDNVELFIFESDSDLFEPLTNSISIG*SETGAWR 153
           YH I   + ++  +  SD DL + L  S+S+  +  GA R
Sbjct: 411 YHEIATCNGLDSLLKNSDQDLLKELEESLSLPRTTWGAVR 450


>SB_15187| Best HMM Match : PilN (HMM E-Value=7.5)
          Length = 310

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 34  YHRIVLRDNVELFIFESDSDLFEPLTNSISIG*SETGAWR 153
           YH I   + ++  +  SD DL + L  S+S+  +  GA R
Sbjct: 100 YHEIATCNGLDSLLKNSDQDLLKELEESLSLPRTTWGAVR 139


>SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)
          Length = 567

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   RNSVVLVQNYHRIVLRDNVELFIFESDSDLFEPL 108
           +++ VLV   H ++LR NV  +++  ++D +  L
Sbjct: 364 KDATVLVSLSHVVILRRNVVAYVYSRENDQWRAL 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,419,251
Number of Sequences: 59808
Number of extensions: 148330
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)