Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0982
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 176 WTDQVGSDLHAPVSDYPIEIE 114
           +T+++       VSDYP+E++
Sbjct: 383 YTNEIDFSFPDSVSDYPLELK 403


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 175 GPTRLVRISTPQFPTIRLRLSSSVAQRGQSQIQ 77
           GPT+    +T  F    LRL+S      +S++Q
Sbjct: 299 GPTQTTLNATTLFCPPNLRLTSERGYEQESKVQ 331


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 175 GPTRLVRISTPQFPTIRLRLSSSVAQRGQSQIQ 77
           GPT+    +T  F    LRL+S      +S++Q
Sbjct: 389 GPTQTTLNATTLFCPPNLRLTSERGYEQESKVQ 421


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 SDSRKLGRGDPNQPGRSN 178
           S + K+GR + +QPG  N
Sbjct: 145 SPNSKIGRDELSQPGSLN 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,016
Number of Sequences: 438
Number of extensions: 1347
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)