Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0982
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59140.1 68416.m06593 ABC transporter family protein putative...    31   0.29 
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   0.89 
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    29   1.2  
At2g39950.1 68415.m04909 expressed protein                             29   1.2  
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    28   1.6  
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    28   1.6  

>At3g59140.1 68416.m06593 ABC transporter family protein putative
            multi resistance protein mrp - Arabidopsis thaliana,
            EMBL:ATMRPPROT
          Length = 1453

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 291  VVTVAHRLPTVIEALIIIAFVEIRELE*D 205
            V+TVAHR+PTV++  ++++  + R +E D
Sbjct: 1395 VITVAHRIPTVMDCTMVLSISDGRIVEYD 1423


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 291  VVTVAHRLPTVIEALIIIAFVEIRELE*DFASYVL 187
            V T+AHR+PTVI++ +++   + R  E D  + +L
Sbjct: 1456 VCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLL 1490


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
            MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
            thaliana]
          Length = 1294

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/27 (44%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
 Frame = -3

Query: 291  VVTVAHRLPTVIEA--LIIIAFVEIRE 217
            V+TVAHR+PTVI++  +++++F ++ E
Sbjct: 1233 VITVAHRVPTVIDSDMVMVLSFGDLVE 1259


>At2g39950.1 68415.m04909 expressed protein
          Length = 636

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 200 PPMSCFLCWTDQVGSDLHAPVSDY---PIEIEFVS 105
           P  S + CW     S LHAP + Y   P+ IE  S
Sbjct: 422 PVFSPYYCWCPPTTSSLHAPSASYQFPPLSIELPS 456


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
            transporter-like proteins
          Length = 1037

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 291  VVTVAHRLPTVIEALIIIAFVEIRELE*DFASYVL 187
            VVT+AHR+ TVIE+ +++   + R  E D  + +L
Sbjct: 974  VVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLL 1008


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
            ATP-binding cassette transporter MRP8 GI:18031899 from
            [Arabidopsis thaliana]
          Length = 1490

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 291  VVTVAHRLPTVIEALIIIAFVEIRELE*DFASYVL 187
            VVT+AHR+ TVIE+ +++   + R  E D  + +L
Sbjct: 1427 VVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLL 1461


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,665,113
Number of Sequences: 28952
Number of extensions: 112474
Number of successful extensions: 282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)