SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0981
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein ...    36   0.026
At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase...    36   0.034
At3g22270.1 68416.m02815 expressed protein                             35   0.060
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ...    34   0.10 
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ...    33   0.18 
At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3...    32   0.42 
At2g45160.1 68415.m05622 scarecrow transcription factor family p...    32   0.42 
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ...    32   0.42 
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ...    31   0.56 
At1g15780.1 68414.m01893 expressed protein                             31   0.56 
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At5g62070.1 68418.m07790 calmodulin-binding family protein conta...    30   1.7  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    30   1.7  
At2g45910.1 68415.m05709 protein kinase family protein / U-box d...    30   1.7  
At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ...    29   2.2  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    29   2.2  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   3.0  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    29   3.0  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   3.0  
At5g62210.1 68418.m07811 embryo-specific protein-related contain...    29   3.9  
At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta...    29   3.9  
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C...    29   3.9  
At1g72650.2 68414.m08402 myb family transcription factor contain...    29   3.9  
At1g72650.1 68414.m08401 myb family transcription factor contain...    29   3.9  
At1g68670.1 68414.m07846 myb family transcription factor contain...    29   3.9  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   3.9  
At1g30280.1 68414.m03703 expressed protein contains low similari...    29   3.9  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    29   3.9  
At3g61490.2 68416.m06887 glycoside hydrolase family 28 protein /...    28   5.2  
At3g61490.1 68416.m06886 glycoside hydrolase family 28 protein /...    28   5.2  
At3g31410.1 68416.m04010 hypothetical protein similar to hypothe...    28   5.2  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    28   6.8  
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ...    28   6.8  
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ...    28   6.8  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    28   6.8  
At3g50370.1 68416.m05508 expressed protein                             28   6.8  
At3g18010.1 68416.m02289 homeobox-leucine zipper transcription f...    28   6.8  
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    28   6.8  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    28   6.8  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    27   9.0  
At4g33510.1 68417.m04759 2-dehydro-3-deoxyphosphoheptonate aldol...    27   9.0  
At4g12450.1 68417.m01970 expressed protein                             27   9.0  
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi...    27   9.0  
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ...    27   9.0  
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ...    27   9.0  

>At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 292

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 172 SNEARRP-KTYNCTACNKWFTSS----GHLKRHYNTTLHKNAVRSSGQPDPATMPISSHH 336
           S+ +++P KT+ C+ C   F+S     GH++RH   T++ NA  +        +  SSHH
Sbjct: 182 SDGSKKPEKTHECSICKAEFSSGQALGGHMRRHRGLTINANATSAI----KTAISSSSHH 237

Query: 337 H 339
           H
Sbjct: 238 H 238


>At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase,
           putative similar to SP|P34047
           Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19)
           (IGPD 1) {Arabidopsis thaliana}; contains Pfam profile
           PF00475: imidazoleglycerol-phosphate dehydratase
          Length = 272

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
 Frame = +1

Query: 307 PATMPISSHHHPSRDAIQNRAQQQNADSNTQSPVPSEDGRSVDESAMQSPYASQNFDRAH 486
           P T   SSH  P R  + N   Q     +  SP P ++G     +A  SP  S       
Sbjct: 24  PRTSIASSHPPPPRFLVMNSQSQHRPSISCASPPPGDNGFPAITTA--SPIESARIGEVK 81

Query: 487 RVASMQSKSPYTHLQQGNLDNNFSNNPLANHPLQHQVGSHPL-NIGSQPPGIGISNDNGH 663
           R     + S   +L    + ++ +  P  +H L  Q+ SH L ++  +  G    +D+  
Sbjct: 82  RETKETNVSVKINLDGHGVSDSSTGIPFLDHMLD-QLASHGLFDVHVRATGDTHIDDHHT 140

Query: 664 QGSKGVAISTA 696
                +AI TA
Sbjct: 141 NEDVALAIGTA 151


>At3g22270.1 68416.m02815 expressed protein
          Length = 782

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 9/222 (4%)
 Frame = +1

Query: 28  PVATTNPDMKPP--YRPYDSPAVPQITSTQPANSTSSNLPTIG-GKGANWKSNEARRPK- 195
           P    +P   P   +R    P   Q+T + P+  ++S     G  +G ++  N  R    
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGGSQLTYSAPSPLSNSGFHLSGLSQGPHYGGNLTRYASC 246

Query: 196 --TYNCTACNKWFTSSGHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRA 369
             T        W T  GHL   ++  LH N V+   Q  P    I S H  +    Q+ A
Sbjct: 247 GPTLGNMVQPHWVTDPGHLHGDHSGLLH-NLVQQQHQQLPPRNAIMSQHLLALQQRQSYA 305

Query: 370 QQQNADSNTQSPVPSEDGR---SVDESAMQSPYASQNFDRAHRVASMQSKSPYTHLQQGN 540
           Q     S   S  PS   +    V E   +  + S +  R +R  S Q+    +   +  
Sbjct: 306 QLAALQSQLYSSYPSPSRKVPFGVGE-VREHKHKSSHRSRKNRGLSQQTSDAASQKSETG 364

Query: 541 LDNNFSNNPLANHPLQHQVGSHPLNIGSQPPGIGISNDNGHQ 666
           L   F +  + +  ++  +     N  S  P +   ND  HQ
Sbjct: 365 L--QFRSKHMTSEEIESILKMQHSNSHSNDPYV---NDYYHQ 401


>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 214

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 24/96 (25%), Positives = 43/96 (44%)
 Frame = +1

Query: 190 PKTYNCTACNKWFTSSGHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRA 369
           PK Y C+ C + F S+  L  H N  +H+   R+  +  P+ +    HH P  +   N +
Sbjct: 46  PKNYTCSFCRREFRSAQALGGHMN--VHRRD-RAKLRQIPSWLFEPHHHTPIANPNPNFS 102

Query: 370 QQQNADSNTQSPVPSEDGRSVDESAMQSPYASQNFD 477
              ++ + T    PS      ++ +  +P+ S  FD
Sbjct: 103 SSSSSSTTTAHLEPS----LTNQRSKTTPFPSARFD 134


>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
           (ZAT10) / salt-tolerance zinc finger protein (STZ)
           identical to salt-tolerance zinc finger protein
           GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
           contains Pfam domain, PF00096: Zinc finger, C2H2 type;
           identical to cDNA  zinc finger protein STZ/ZAT10
           (STZ/ZAT10)  GI:9965730
          Length = 227

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
 Frame = +1

Query: 193 KTYNCTACNKWFTS----SGHLKRHY--NTTLHKNAVRSSGQPDPATMPISSHHHPSRDA 354
           K++ CT CNK F S     GH + HY  N  ++ ++V S+ +   +T  +SS H      
Sbjct: 134 KSHVCTICNKSFPSGQALGGHKRCHYEGNNNINTSSV-SNSEGAGSTSHVSSSHRGFDLN 192

Query: 355 IQ--NRAQQQNADSNTQSPVPSEDGR 426
           I         N D    SP+P++  R
Sbjct: 193 IPPIPEFSMVNGDDEVMSPMPAKKPR 218


>At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3)
           identical to Cys2/His2-type zinc finger protein 3
           [Arabidopsis thaliana] gi|6009889|dbj|BAA85109
          Length = 193

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 26/109 (23%), Positives = 45/109 (41%)
 Frame = +1

Query: 100 TSTQPANSTSSNLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLHKN 279
           +S Q      ++  ++ G G N KS  +   K++ C+ C K F +   L  H     H +
Sbjct: 85  SSYQALGGHKASHRSLYGGGENDKSTPSTAVKSHVCSVCGKSFATGQALGGH--KRCHYD 142

Query: 280 AVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPVPSEDGR 426
              S+ +   +T  +SS  H   D      Q  + D    SP+ ++  R
Sbjct: 143 GGVSNSEGVGSTSHVSSSSHRGFDLNIIPVQGFSPDDEVMSPMATKKPR 191


>At2g45160.1 68415.m05622 scarecrow transcription factor family
           protein 
          Length = 640

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
 Frame = +1

Query: 247 KRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQS-----PVP 411
           KR  + +LH+     S  PDP   P+   H        N  QQQ   S++ +     PVP
Sbjct: 198 KRFNSGSLHQPVFPLS-DPDPGHDPVRRQHQFQFPFYHNNQQQQFPSSSSSTAVAMVPVP 256

Query: 412 SEDGRSVDESAMQSPYASQNFDRAHRVASM-QSKSPYTHLQQGNLDN-NFSNNPLANH-- 579
           S  G + D+   QS    Q F+ A  + +   +   +T L QG L   N   N  +NH  
Sbjct: 257 S-PGMAGDD---QSVIIEQLFNAAELIGTTGNNNGDHTVLAQGILARLNHHLNTSSNHKS 312

Query: 580 PLQHQVGSH 606
           P Q +  SH
Sbjct: 313 PFQ-RAASH 320


>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; weak similarity to Zinc finger protein T86
           (Swiss-Prot:O00488) [Homo sapiens]
          Length = 198

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 199 YNCTACNKWFTSSGHLKRHYNTTLHKNAVRSSGQPDP 309
           +NC  C++ F+++  +  H+ T  HK  V+   +P P
Sbjct: 138 FNCLLCHRNFSNASVMDYHFKTKKHKKRVKKIERPAP 174


>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 395

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +1

Query: 160 ANWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLH-KNAVRSSGQPDPATMPISSHH 336
           A  K      P  Y+C  CNK + SS   ++H  +  H   A  S+G+ D A   I    
Sbjct: 55  AQEKVKAVEAPMLYSCGICNKGYRSSKAHEQHLKSKSHVLKASTSTGEEDKA---IIKQL 111

Query: 337 HPSRDAIQNRAQQQNADSNTQS 402
            P R    N AQ + +    +S
Sbjct: 112 PPRRVEKNNTAQLKGSIEEEES 133


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
 Frame = +1

Query: 307 PATMP-ISSHHHPSRDAIQNRAQQQNAD-SNTQSPVPSEDGRSVDESAMQSPYASQNFDR 480
           P++MP +SS  + +  ++ N    QNA+  N    +    G+    S M S    Q   R
Sbjct: 158 PSSMPPVSSITNNNTTSVVN----QNANMQNVAGMLQDSSGQHGLSSNMFSGPQRQMLGR 213

Query: 481 AHRVASMQSKSPYTH---LQQGNLDNNF--SNNPLANHPLQHQVGSHPLNI-------GS 624
            H ++S Q + PY +   LQQ  L  NF   N P  N  L   +     N+        S
Sbjct: 214 PHAMSSQQQQQPYLYQQQLQQQLLKQNFQSGNVPNPNSLLPSHIQQQQQNVLQPNQLHSS 273

Query: 625 QPPGIGIS 648
           Q PG+  S
Sbjct: 274 QQPGVPTS 281


>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +1

Query: 121 STSSNLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSSGHLKR-HYNTTLHKNAV-RSS 294
           +T++NLPT     +N +S     P+  + +      +S G      +    H++A  R++
Sbjct: 25  TTATNLPT---STSNMRSTSLMTPRVAHTS-----MSSGGDFPDDRFFHARHQSATDRAA 76

Query: 295 GQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPVPSEDGRSVDES 441
                A MPIS+ + PS  +   R  Q +      SP+ S   RSV  S
Sbjct: 77  SNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQAS 125


>At5g62070.1 68418.m07790 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 403

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +1

Query: 124 TSSNLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLHKNAVRSSGQP 303
           ++ N P +G  G+  ++      ++     CN ++ S  H     NT  +K  VRS   P
Sbjct: 278 STENSPQVGSSGSRRRTPFTPTSRSEYSWGCNNYYYSGYHPNYMANTESYKAKVRSQSAP 337


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 31/131 (23%), Positives = 46/131 (35%)
 Frame = +1

Query: 61  PYRPYDSPAVPQITSTQPANSTSSNLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSSG 240
           P R  D PAVP+        S+S +      KG N   +    PK    +  N   TSS 
Sbjct: 112 PSRSRDRPAVPREKPVTALRSSSFHGSRNVPKGGNTAKSPPVAPKK---SGLNSSSTSSK 168

Query: 241 HLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPVPSED 420
             K        K A       D A+M  +   H            Q +D + + P   ++
Sbjct: 169 SKKEGSENVRIKKASDKEIALDSASMSSAQEDHQEEILKVESDHLQVSDHDIEEPKYEKE 228

Query: 421 GRSVDESAMQS 453
            + V E  +Q+
Sbjct: 229 EKEVQEKVVQA 239


>At2g45910.1 68415.m05709 protein kinase family protein / U-box
           domain-containing protein contains Pfam profiles PF00069
           Eukaryotic protein kinase domain,  PF04564: U-box
           domain; supported by tandem duplication of  (GI:3386604)
           (TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
          Length = 834

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
 Frame = +1

Query: 208 TACNKWFTSSGHLKRHYNTTLH---------KNAVRSSGQPDPATMPISSHHHPSRDAIQ 360
           T C  WFT  G+L      T+          + ++ +S      + P S H H SR    
Sbjct: 189 TLCQIWFTCKGYLIHTREATMDDTESEYASPRPSISASDLLQTFSTPESEHQHISRVQST 248

Query: 361 NRAQQ--QNADSNTQSPVPSEDGRSVDESAMQS 453
           +  QQ   N  S  QS   S+   + DE   +S
Sbjct: 249 DSVQQLVSNGSSTEQSGRVSDGSLNTDEEERES 281


>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 137

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 115 ANSTSSNLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSS----GHLKRHYNTTLHKNA 282
           ++STSS    +  +  +  S      + Y CT C + FT++    GH+  H    L+K  
Sbjct: 7   SSSTSSETGAVRHRRTSSSSVSTVTRRMYECTFCKRGFTNAQALGGHMNIHRRDRLNKAK 66

Query: 283 VRS 291
           V++
Sbjct: 67  VQN 69


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/100 (25%), Positives = 39/100 (39%)
 Frame = +1

Query: 379 NADSNTQSPVPSEDGRSVDESAMQSPYASQNFDRAHRVASMQSKSPYTHLQQGNLDNNFS 558
           ++D+  QS  P  D  S    A   P  S N   + +  S  S+SP +     N D N  
Sbjct: 21  SSDNQQQSSPPPSDSSSPSPPAPPPPDDSSN--GSPQPPSSDSQSPPSPQGNNNNDGNNG 78

Query: 559 NNPLANHPLQHQVGSHPLNIGSQPPGIGISNDNGHQGSKG 678
           NN   N+   +   ++  N G+        N+N    + G
Sbjct: 79  NNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNG 118


>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +1

Query: 31   VATTNPDMKPPY-----RPYDSPAVPQITSTQPANSTSSNLPTIGG 153
            ++TT   + PP+      P  SP +P+I  + PA+S S+ + +I G
Sbjct: 926  LSTTTSHLPPPFLSTAPAPAPSPLLPEILPSLPASSLSTKVESIQG 971


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
            Membrane-associated protein Hem (Dhem-2)
            (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
            similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
            (Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
            [Rattus norvegicus]
          Length = 1339

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 33/136 (24%), Positives = 48/136 (35%)
 Frame = +1

Query: 292  SGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPVPSEDGRSVDESAMQSPYASQN 471
            S  P       S +H PS   I      +N+ +    P       S   +A  S Y   +
Sbjct: 1208 SNTPSTPLSTASPYHSPSVSLIHASPSMKNSTT----PQRGSGSGSSSTAAPDSGYFKGS 1263

Query: 472  FDRAHRVASMQSKSPYTHLQQGNLDNNFSNNPLANHPLQHQVGSHPLNIGSQPPGIGISN 651
                   +S+  +  YT  + GN  NN +NN         + G  PL+  S   G   SN
Sbjct: 1264 S------SSLYGQEHYTESETGNSRNNENNNNNKQRGSSRRSG--PLDYSSSHKGGSGSN 1315

Query: 652  DNGHQGSKGVAISTAG 699
              G       A+S +G
Sbjct: 1316 STGPSPLPRFAVSRSG 1331


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 3/166 (1%)
 Frame = +1

Query: 28  PVATTNPDMKPPYRPYDSPAVPQITSTQPANSTSSNLPTIGGKGANWKSNEARRPKTYNC 207
           PVA   P   PP R    P+ P            + LP+    G +  +N    P   + 
Sbjct: 455 PVAQRLPS--PPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSL 512

Query: 208 TACN-KWFTSSGHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNA 384
           +    K    S  ++R  + T  +  V S  Q    T P       S   ++ R +   +
Sbjct: 513 SPPGRKKVLPSPPVRRRRSLTPDEERV-SLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPS 571

Query: 385 DSN--TQSPVPSEDGRSVDESAMQSPYASQNFDRAHRVASMQSKSP 516
             +   +SPV       V+  + +S  AS++ DR  R +   S+SP
Sbjct: 572 SRHQKARSPVRRRSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSP 617


>At5g62210.1 68418.m07811 embryo-specific protein-related contains
           weak similarity to embryo-specific protein 3
           (GI:3335171) [Arabidopsis thaliana]
          Length = 223

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   PPLVDYQGPVATTNPDMKPPYRPYDSPAVPQITSTQPANSTS 129
           PP  D+  P + + P   PPY P + P++P      P ++ S
Sbjct: 159 PPSPDFP-PFSPSIPPPSPPYFPPEPPSIPPPPPPSPPSAAS 199


>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 409

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 238 GHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQ--QNADSNTQSP 405
           G+ K   +  +  N      +P P+T    +HH  SR  +    ++  Q+ D+NTQ P
Sbjct: 205 GNYKTETSHHIFNNGDNGYLRPFPSTNTPLNHHRKSRSLVNALIEEVNQSPDNNTQEP 262


>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
           type) family protein identical to superman protein
           GB:S60325 from [Arabidopsis thaliana]; contains Pfam
           domain, PF00096: Zinc finger, C2H2 type
          Length = 204

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 190 PKTYNCTACNKWFTSSGHLKRHYNTTLHKNA-VRSSGQPDPATMPISSHHHPS 345
           P++Y C+ C + F S+  L  H N      A +R    P  ++ P   + +P+
Sbjct: 44  PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSPPYPNPN 96


>At1g72650.2 68414.m08402 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 630

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +1

Query: 229 TSSGHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPV 408
           +S+ H+  H N   H  A         A   +     P+R  I+  ++  +   N +S +
Sbjct: 328 SSTDHVNGHSNGGNHYYASEDYSSEQRAAKRVRK---PTRRYIEELSETDDKQQNDKSVI 384

Query: 409 PSEDGRSVDESAMQS 453
           PS+D R  ++S ++S
Sbjct: 385 PSKDQRLSEKSEVRS 399


>At1g72650.1 68414.m08401 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 624

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +1

Query: 229 TSSGHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPV 408
           +S+ H+  H N   H  A         A   +     P+R  I+  ++  +   N +S +
Sbjct: 322 SSTDHVNGHSNGGNHYYASEDYSSEQRAAKRVRK---PTRRYIEELSETDDKQQNDKSVI 378

Query: 409 PSEDGRSVDESAMQS 453
           PS+D R  ++S ++S
Sbjct: 379 PSKDQRLSEKSEVRS 393


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 82  PAVPQITSTQPANSTSSNLPTIGGKGANWKSNEARR 189
           PAV ++ S+ PA +TSS   T GGK    K+ +  R
Sbjct: 167 PAV-KVASSMPATTTSSTTETCGGKSDLIKAGDEER 201


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 28  PVATTNPDMKPPYRPYDSPAVPQ---ITSTQPANSTSSNLP 141
           PV++++ D  P   P  S  VPQ   +TST   ++T  N+P
Sbjct: 362 PVSSSSQDPVPASIPISSAPVPQTFSVTSTSTVSATGFNVP 402


>At1g30280.1 68414.m03703 expressed protein contains low similarity
           to cyclin G-associated kinase GI:1902912 SP|P97874 from
           [Rattus norvegicus]
          Length = 455

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +1

Query: 295 GQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQSPVPSEDGRSVDESAMQSPYASQNF 474
           G   PA+ P+SS      D   +  Q+ N D   +  V  ED    +E  M S     N 
Sbjct: 233 GPSSPASSPVSSFICEEEDDNTHAKQRTNRDCKVEE-VVVEDEEDEEEEEMSSYVIEINS 291

Query: 475 DRAHR 489
           DR  R
Sbjct: 292 DRFDR 296


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +1

Query: 1   MPPLVDYQGPVATTNPDMK-----PPYRPYDSPAVPQITSTQPA--NSTSSNLP 141
           +PPL D   P + ++P +      PP    +SP+ P+ + T PA  N ++ N P
Sbjct: 71  LPPLTDSPPPPSDSSPPVDSTPSPPPPTSNESPSPPEDSETPPAPPNESNDNNP 124



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 4   PPLVDYQGPVATTNPDMKPPYRPYDSPAVPQITSTQPANSTSSN 135
           PPL     P A+ +P   PP  P D    P I  + PA S  +N
Sbjct: 150 PPLQSPPAPPAS-DPTNSPPASPLDPTNPPPIQPSGPATSPPAN 192


>At3g61490.2 68416.m06887 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 476

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 KWFTSSGHLKRHYNTTLHKNAVRSSGQ 300
           KW T S +L  H+   LHK+A+  + Q
Sbjct: 88  KWLTGSFNLTSHFTLFLHKDAILLAAQ 114


>At3g61490.1 68416.m06886 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 476

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 KWFTSSGHLKRHYNTTLHKNAVRSSGQ 300
           KW T S +L  H+   LHK+A+  + Q
Sbjct: 88  KWLTGSFNLTSHFTLFLHKDAILLAAQ 114


>At3g31410.1 68416.m04010 hypothetical protein similar to
           hypothetical protein GB:CAB77996 GI:7267513 from
           [Arabidopsis thaliana]
          Length = 315

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 1   MPPLVDYQGPVATTNPDMKPPYRPYDSPAVPQITSTQPANSTSSNLPTIGG 153
           MPPL    G         +P  +P D       T+T+  +ST  N   +GG
Sbjct: 1   MPPLRKKTGLKRRRGTTEEPTTKPIDGGTTEDQTTTEEPSSTKQNPAIVGG 51


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
 Frame = +1

Query: 43  NPDMKPPYRPYDSPAVPQITSTQPANST--SSNLPTIGGKGANWKSNEARRPKTYNCTAC 216
           NP    P  P +SPAV    +  P      S N       GA   +NE  +P        
Sbjct: 239 NPPTTHPVFPIESPAVSPDHAANPVKHPPPSDNGDDSKSPGAA-PANETAKPLPVFPHKA 297

Query: 217 NKWFTSSGHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDA--------IQNRAQ 372
           +    +    K  +N   H +    S  P P + P + HHHPS  +          ++ +
Sbjct: 298 SPPSIAPSAPK--FNR--HSHHTSPSTTPPPDSTPSNVHHHPSSPSPPPLSSHHQHHQER 353

Query: 373 QQNADSNTQSPVP 411
           ++ ADS   SP+P
Sbjct: 354 KKIADSPAPSPLP 366


>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 405

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 KSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLH 273
           KSNEA  P  Y C  C K + SS   ++H  +  H
Sbjct: 60  KSNEA--PMLYTCAICAKGYRSSKAHEQHLQSRSH 92


>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 404

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 KSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLH 273
           KSNEA  P  Y C  C K + SS   ++H  +  H
Sbjct: 60  KSNEA--PMLYTCAICAKGYRSSKAHEQHLQSRSH 92


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 37  TTNPDMKPPYRPYDSPAVPQITSTQPANSTSSNLPTIG 150
           +++P + PP  PY SP +P   S  P     S LP+ G
Sbjct: 158 SSDPPLPPPPPPYPSP-LPPPPSPSPTPGPDSPLPSPG 194


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
 Frame = +1

Query: 61   PYRPYDSPAVPQITSTQPANSTSSNLPTIGGKGANWKSNEARR-PKTYNCTACNKWFTSS 237
            PY P+  P   Q+   Q      SNLP+              R P     T  +    SS
Sbjct: 2001 PYMPFSGPPTMQMQKQQEGTD-GSNLPSPQFNNNMLPPPPPNRYPNVQASTVVDAMVDSS 2059

Query: 238  GHLKRHYNTTLHKNAVRSSGQPDPATMPISSHHHPSRDAIQNRAQQQNADSNTQS 402
                 + +TT    A  +S   DP +    + + P     Q + QQ + + NTQS
Sbjct: 2060 N---AYSSTTGAPPAKPTSTLSDPNSNNTQNPNGPGFKPPQQQQQQSSQEKNTQS 2111


>At3g18010.1 68416.m02289 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]; similar to HB2
           homeodomain protein GB:CAA09367 from [Populus tremula x
           Populus tremuloides]
          Length = 366

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
 Frame = +1

Query: 307 PATMPISSHHHPSRDAIQNRAQQQNADSNTQSPV-PSEDGRSVDESAMQSPYASQNFDRA 483
           P +   SSHHH  R+ I N     +  SN+ + V  S+D  +V    +++  A+ N +  
Sbjct: 246 PPSFYSSSHHHHQRNLILNSPTVSSNMSNSNNAVSASKDTVTVSPVFLRTREAT-NTETC 304

Query: 484 HRVASMQSKSPYTHLQQGNLDNNFSNNPLANHPLQHQ 594
           HR     +K    H    N + +     L   PL+ +
Sbjct: 305 HRNGD-DNKDQEQHEDCSNGELDHQEQTLELFPLRKE 340


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
            protein
          Length = 883

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +1

Query: 289  SSGQPDPATMPISSHHH---PSRDAIQNRAQQQNAD--SNTQSPVPSEDGRSVDESAMQS 453
            ++G  DP+ M I+ H +   P+  A  +    QN    S+ QSP  +  G+S   + + S
Sbjct: 751  ATGLEDPSRM-INKHGNIYVPNPQAETSEIWMQNPRDLSSLQSPYYNVAGQSPHGAYLSS 809

Query: 454  PYASQNFDRAHRVASMQSKSPYTHLQQGNLDNNFSNNP 567
              A Q+F+   + + MQ +  +   Q G + N     P
Sbjct: 810  HTAHQSFNPTAQSSHMQFQGLFHPSQPGTMANPHHMGP 847


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 514 PYTHLQQGNLDNNFSNNPLANHPLQHQVGSHPLNIGSQ 627
           P  HL      N++  NP +  P QHQ    P +  SQ
Sbjct: 45  PIKHLSTSAAANDYHQNPQSGSPSQHQRPYPPQSFDSQ 82


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +1

Query: 283 VRSSGQPDPATMPISS-HHHPSRDAIQNRAQQQNADSNTQSPVPSE 417
           +RS G   P   P+S  HHHP    +           N Q  VPS+
Sbjct: 420 IRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQ 465


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 4   PPLVDYQGPVATTNPDMKPPYRPYDSPAVPQITSTQPANST 126
           PP   Y+ P   T P   P  +P   P    +T  +P  ST
Sbjct: 54  PPTPSYKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVST 94


>At4g33510.1 68417.m04759 2-dehydro-3-deoxyphosphoheptonate aldolase
           2 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
           2 / DAHP synthetase 2 (DHS2) nearly identical to
           SP|Q00218
          Length = 507

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 46  PDMKPPYRPYDSPAVPQITSTQPANSTSSNLPTIGGKGANWKSNEARRPKTY 201
           P    P RP     V  + ST P  ST S   ++     +WKS +A +   Y
Sbjct: 17  PYRHAPRRPISFSPVFAVHSTDPKKSTQSASASVKWSLESWKSKKALQLPDY 68


>At4g12450.1 68417.m01970 expressed protein
          Length = 277

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 325 SSHHHPSRDAIQNRAQQQNADSNTQSPVPSEDGRSVDESAMQSPYASQNF 474
           S+ HHP+R ++  RA  ++              R+V E   QS ++S  F
Sbjct: 74  SNSHHPTRRSVSARASSESVLPVLTDLPDGHPSRNVVEIIFQSSWSSDEF 123


>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 747

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 151 GKGANWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTL 270
           G G NWK     + + +  T  N+       LKRHY T L
Sbjct: 625 GNGINWKGQVFSKMRNHTLT--NRMTGVGNTLKRHYETYL 662


>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 133 NLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSSGHLKRH 255
           NLP    +    +  E   P T+ CT C K F    +L+ H
Sbjct: 222 NLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMH 262


>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 133 NLPTIGGKGANWKSNEARRPKTYNCTACNKWFTSSGHLKRH 255
           NLP    +    +  E   P T+ CT C K F    +L+ H
Sbjct: 222 NLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMH 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.308    0.124    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,788
Number of Sequences: 28952
Number of extensions: 300698
Number of successful extensions: 1110
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)

- SilkBase 1999-2023 -