Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0980
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   4.2  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   5.6  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.8  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   9.8  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 233 LYNRVAFLQHRYIIPRPVSSH 295
           LY  +  L H++I+P P SSH
Sbjct: 178 LYAPLHKLHHKWIVPTPYSSH 198


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 125 YSLSINLSINALTICQGRLWTPCLHG-SIKIF 217
           YSL    +INAL     R W     G SI+IF
Sbjct: 228 YSLEAKANINALVFSPNRYWLCAATGSSIRIF 259


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 82  LSGCACNAGRDCVSCQYWKEALC 14
           LSG   +  R+C+S Q   EALC
Sbjct: 108 LSGLIFDEARNCLSQQLTNEALC 130


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 215 FLCYIMLYNRVAFLQHRYIIPRPVSSH 295
           FL +  +Y R+  L H++II  P +SH
Sbjct: 139 FLHHRYVYPRLHKLHHKWIICTPYASH 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,485
Number of Sequences: 5004
Number of extensions: 46727
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)