Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0980
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944...    29   2.5  
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    28   5.7  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    27   7.5  

>05_03_0622 -
           16293341-16293350,16293783-16294063,16294343-16294474,
           16294561-16294741,16295054-16295096,16295183-16295249,
           16296708-16296834,16296985-16297620,16298253-16298761,
           16298842-16299157,16299615-16300053,16300128-16300353,
           16300441-16300625,16300839-16300950,16301459-16301495,
           16301977-16302011,16302497-16302810,16303463-16303475
          Length = 1220

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 TCIFYSLSINLSINALTICQGRLWTPCLHGSIKIF 217
           TC++ SL  +L I++  I +   WTP    +IK+F
Sbjct: 743 TCLWSSLRTSLQISSKAINEKDKWTPINKHNIKVF 777


>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 222 HKKILMDPWRQGVHNR 175
           H K+ +DPWRQGV  R
Sbjct: 751 HYKLYIDPWRQGVLQR 766


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 112 TDYESVATRILSG--CACNAGRDCVSCQYWKEALC 14
           TD ES  ++IL    C C  GRDCV     +   C
Sbjct: 555 TDTESDGSKILKNKCCICLGGRDCVGAVSQENLQC 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,708,072
Number of Sequences: 37544
Number of extensions: 264496
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)