Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0980
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            29   2.5  
SB_26486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          27   7.7  

>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +2

Query: 149 INALTICQGRLWTPCLHGSIKIFLCYIM---LYNRVAFL 256
           +  + +CQ +L+TP +   +++F C ++   L+ RV FL
Sbjct: 48  VTCIVLCQLQLFTPIVLCQLQLFTCIVLCQQLFTRVLFL 86


>SB_26486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 445 IRLDVSKTQLTGTWLRVGLALRVK*TSYTNLYITILLKN 329
           +  D   TQL  TW R G  +RVK     NL  T LL++
Sbjct: 16  LHYDSHFTQLHKTWEREGALIRVKAVFSINLVPTALLRS 54


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 67   THIHSVFVWLHFHNRYLYIL*FIYK 141
            T+  ++ VWL+F  +YLY L F+Y+
Sbjct: 2172 TYGTALAVWLYFTWKYLYCLAFVYQ 2196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,590,343
Number of Sequences: 59808
Number of extensions: 340498
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)