Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0980
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine r...    29   1.7  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81484-1|CAB03967.1|  314|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 101 FIIGTCIFYSLSINLSINALTICQGRLWTPCLHGSIKIFLCYI 229
           +++G C+FYSL++++ +N L       +T  L+ S    L Y+
Sbjct: 173 WLVG-CVFYSLAVSIKMNVLLFAPALFFTLLLNNSYMATLGYL 214


>AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine
           receptor, class x protein21 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +3

Query: 213 FFCAISCYIIE*HFFNIDI*FLDRCHLTETC--LVWYFVF*FFNKIVMYKFV*DVYLTRS 386
           F C +  +I+  HFF  D  F      T  C  + WY  F   N +VM   V ++     
Sbjct: 133 FICTLFYFILGCHFFYSDTSFTFGFRETRRCTKITWYSDFMLNNSLVMVTLVFNLLTAYK 192

Query: 387 ASPT 398
           A  T
Sbjct: 193 AGTT 196


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 95  YTFIIGTCIFYSLSINLSINAL--TICQGRLWTPCLHGSIKIFLCYIMLYNRV 247
           YT  + T +FY L I+LS N +   +    +W     GS++  L  ++ + RV
Sbjct: 55  YTLNLTTLMFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERV 107


>Z81484-1|CAB03967.1|  314|Caenorhabditis elegans Hypothetical
           protein C47A10.2 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +2

Query: 23  FLPILTADAVASRVARTSTQYSCGYTFIIGTCIFYSLSINLSINALTICQGRLWTPCLHG 202
           FL +L +  V S +  T T ++       G CI +     +     T+   + W+ CL  
Sbjct: 2   FLAVLVSTTVYSNILFTITAFTLPIHLFGGYCILFKTPNAMKSVKWTLFNLQFWSMCLDL 61

Query: 203 SIKIF 217
            I  F
Sbjct: 62  LISFF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,210
Number of Sequences: 27780
Number of extensions: 261974
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)