Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0980
(553 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase prec... 23 1.6
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 6.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.3
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 8.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 8.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 8.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 8.3
DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid p... 21 8.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.3
AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatas... 21 8.3
>AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase
precursor protein.
Length = 156
Score = 23.4 bits (48), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 294 TETCLVWYFVF*FFNKIVMYK 356
T L+ YF+F +FN +V ++
Sbjct: 14 TSFILINYFIFLYFNSLVRFR 34
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 335 EKLKYKIPN*TSLSEMTPVEELYIY 261
+KLK K+ T + TP + YIY
Sbjct: 57 DKLKKKLEEWTGKNITTPWDYYYIY 81
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 6.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 254 LQHRYIIPRPVSSH*DLFSLVF 319
+QH + P P++S +L L F
Sbjct: 348 IQHHFFYPDPLASKYELHGLKF 369
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 443 DTVAILL*SIICVKFITF*FISNKGT 520
D +A + + F+TF FI KGT
Sbjct: 463 DVIARITFPVAYFMFLTFFFIHYKGT 488
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 443 DTVAILL*SIICVKFITF*FISNKGT 520
D +A + + F+TF FI KGT
Sbjct: 449 DVIARITFPVAYFMFLTFFFIHYKGT 474
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 443 DTVAILL*SIICVKFITF*FISNKGT 520
D +A + + F+TF FI KGT
Sbjct: 483 DVIARITFPVAYFMFLTFFFIHYKGT 508
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 443 DTVAILL*SIICVKFITF*FISNKGT 520
D +A + + F+TF FI KGT
Sbjct: 432 DVIARITFPVAYFMFLTFFFIHYKGT 457
>DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid
phosphatase protein.
Length = 373
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 335 EKLKYKIPN*TSLSEMTPVEELYIY 261
+KLK K+ T + TP + YIY
Sbjct: 154 DKLKKKLEEWTGKNITTPWDYYYIY 178
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 430 PSGYIRSAFGTPISTG 445
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 156 P*QYVRGDCGLPVSTG 203
P Y+R G P+STG
Sbjct: 430 PSGYIRSAFGTPISTG 445
>AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatase
precursor protein.
Length = 388
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 335 EKLKYKIPN*TSLSEMTPVEELYIY 261
+KLK K+ T + TP + YIY
Sbjct: 169 DKLKKKLEEWTGKNITTPWDYYYIY 193
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,663
Number of Sequences: 438
Number of extensions: 3168
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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