Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0980
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21230.1 68417.m03070 protein kinase family protein contains ...    28   4.8  
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put...    27   8.3  

>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 122 FYSLSINLSINALTICQG 175
           FY++SIN  +NA+ +C+G
Sbjct: 68  FYNISINGEVNAIALCRG 85


>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           [Nicotiana rustica] GI:609175; contains Pfam profile
           PF00112: Papain family cysteine protease
          Length = 362

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +2

Query: 38  TADAVASRVARTSTQYSCGYTFIIGT--------CIFYSLSINLSINALTICQGRL 181
           TA +  + + R   Q  CG  +  G         CI Y+++++LS+N L  C G L
Sbjct: 114 TAWSQCTSIGRILDQGHCGSCWAFGAVESLSDRFCIKYNMNVSLSVNDLLACCGFL 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,518
Number of Sequences: 28952
Number of extensions: 225956
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)