Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0978
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 29 0.48
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 29 0.85
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 27 2.0
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 3.4
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 3.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 4.5
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 26 6.0
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 6.0
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 6.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 7.9
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 7.9
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 25 7.9
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 25 7.9
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 382 TCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCLNTDGVLTLT 543
TC D CK + +D T N +T E + S+ +G + CL D L ++
Sbjct: 317 TCLQFDQCKLISGSMDKTIRIWNYRTSECI--SILHGHTDSVLCLTFDSTLLVS 368
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 298 TNTCKKLHFKKIIQGHTDE-----TLGDCSF---LNTCFHMDSCKYVHYEVDNTDPNANT 453
T KK H KK+++ H D+ + D SF + + + S + D+ D NA+
Sbjct: 113 TEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILSDPVRRRQFDSVDENADV 172
Query: 454 KTVEALTK 477
+ E+ TK
Sbjct: 173 EPPESTTK 180
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 2.0
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +1
Query: 376 LNTCFHMDSCK-YVHYEVDNTDPN-ANTKTVEALTKSVQNGTSSISKCLNTDGVLTLTPP 549
L + +H+ K Y+ VD D A T L +S N + S+ + ++
Sbjct: 139 LLSSYHLSQDKLYLDRAVDLADRLLAAYNTSTGLPRSNVNLGTRKSRKRTREYFVSTAES 198
Query: 550 QWIQCDLRYLDMTFLGKFAVIMADPPWDIHMGAALWHHVG 669
+Q +LRYL I AD ++ +G A W H G
Sbjct: 199 GTVQMELRYLSYLTGDPKYWITADKTMEVLLGDATWSHTG 238
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 508 SISNLYHFAQTSSAPPLS*CSHLDRCYPLRNERTCSC 398
S+ NL +F++ SA + CS D C L N T +C
Sbjct: 377 SLPNLPNFSEAGSAKSSNFCSSKDNC--LTNRLTLNC 411
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 556 STAEASESKHRLYSSTSISNLYHFAQ-TSSAPPLS*CSHLDRCYPLRNERTCSCP 395
ST+++S S H +STS +++Y F+ T+ P + + Y + R SCP
Sbjct: 31 STSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNGVAQEPTLY--ESSRGLSCP 83
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 427 DNTDPNANTKTVEALTKSVQNGTSSISKC 513
DN P N K V+ KS+++ SIS C
Sbjct: 133 DNVIPYPNNKAVKVSAKSLRSCNISISNC 161
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 659 CHRAAPIWISQGGSAIITANLPKNVMSKYLRSHCIHCG 546
C R S+ GS I +PK+ + K R C HCG
Sbjct: 102 CLRCIQTAESKFGSTCI-CRVPKSKLDKDQRVRCTHCG 138
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +1
Query: 103 SSREKAVKRVGEEIMDLLSK-PTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISPD 279
S E ++++ +I+D LS K++ F + +++E C + D
Sbjct: 322 SDAESQIRKISLKIIDYLSSHEPEKDQDFVVDFLDRFSLRIVEICRYDI----------D 371
Query: 280 SAQDGTTNTCKKLHFKKIIQGHTDETLGDCSF 375
S + TC+KL K + G + C F
Sbjct: 372 SVRSVALKTCEKLMEKISLNGKCINIVSSCIF 403
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 454 KTVEALTKSVQNGTSSISKCLNTDGVLTLTPPQWIQCDLRYLDM 585
K + +T ++ T + + L+L P ++CD YLDM
Sbjct: 13 KFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDM 56
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 620 SAIITANLPKNVMSKYLRSHCIHCGGV 540
+A+ LP+N+ ++ LRS+ +H G +
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEI 202
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 292 GTTNTCKKLHFKKIIQGHTDE 354
GT N KK+ FKK+ GH ++
Sbjct: 336 GTENGKKKMGFKKLSDGHWEQ 356
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 358 LGDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGT 495
+G+ F S KY H+E DP+ +KT+E + ++ T
Sbjct: 12 IGELKFATNTLKRLSEKY-HFEFIVPDPHDRSKTIEKIHEAASKST 56
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 598 YLRTSCPNI*GRTVSTAEASESKHRLYS-STSISNLYHFAQTSSA 467
YLR P I R+ S + S KH+ S S++ISNL ++ SA
Sbjct: 218 YLRNFFPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYSA 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,217
Number of Sequences: 5004
Number of extensions: 61790
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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