Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0978
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 137 2e-37
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 39 0.003
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 39 0.003
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 34 0.094
05_06_0242 + 26638401-26638781 31 0.67
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945... 31 1.2
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 30 1.5
11_06_0157 - 20754134-20755085,20755311-20755642 29 4.7
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 29 4.7
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 28 6.2
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 28 6.2
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 28 6.2
03_02_0336 + 7583779-7583856,7583939-7584022,7584207-7584258,758... 28 6.2
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841... 28 6.2
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 28 8.2
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 28 8.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.2
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 137 bits (331), Expect(2) = 2e-37
Identities = 69/158 (43%), Positives = 90/158 (56%)
Frame = +1
Query: 169 AKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLHFKKIIQGHT 348
+K + FK++GG+Q+ E+C + T+ +C R Q G+ C K+HF++II HT
Sbjct: 406 SKSSKIYSMFKTKGGSQLKEYCTNLTKEDCRR-------QSGSFVACDKVHFRRIIAPHT 458
Query: 349 DETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCLNTDG 528
D LGDCSFL+TC H +CKYVHYE+D T P+ AL Q C +
Sbjct: 459 DTNLGDCSFLDTCRHTKTCKYVHYELDQT-PDIPPMMAGALAPPRQIRLQRAEYCSEVE- 516
Query: 529 VLTLTPPQWIQCDLRYLDMTFLGKFAVIMADPPWDIHM 642
L QWI CD+R M LG+F VIMADPPWDIHM
Sbjct: 517 ---LGEAQWINCDIRNFRMDILGQFGVIMADPPWDIHM 551
Score = 37.1 bits (82), Expect(2) = 2e-37
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 88 LLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADK 195
LL + REK + GEE++DL+ +PTAKE ++A K
Sbjct: 332 LLNKKTYREKQNTKTGEELLDLIHRPTAKETAVAAK 367
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 644 ELPYGTMSDDEMRCLGIP 697
ELPYGTM+DDEMR L +P
Sbjct: 552 ELPYGTMADDEMRTLNVP 569
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +1
Query: 541 TPPQWIQCDLRY--LDMTFLG-KFAVIMADPPWD--IHMGAALWHHV 666
+PP + +CDLR L F G KF VI+ DPPW+ +H + H+
Sbjct: 498 SPPMYYKCDLRQHVLSPEFFGTKFDVILVDPPWEEYVHRAPGITDHI 544
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +1
Query: 541 TPPQWIQCDLRY--LDMTFLG-KFAVIMADPPWD--IHMGAALWHHV 666
+PP + +CDLR L F G KF VI+ DPPW+ +H + H+
Sbjct: 495 SPPMYYKCDLRQHVLSPEFFGTKFDVILVDPPWEEYVHRAPGITDHI 541
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1
Query: 547 PQWIQCDLR--YLDMTFLG-KFAVIMADPPWD--IHMGAALWHHV 666
P + +CDL+ L F G KF VI+ DPPW+ +H + H+
Sbjct: 704 PMYYKCDLKDHMLSPEFFGTKFDVILIDPPWEEYVHRAPGITDHI 748
>05_06_0242 + 26638401-26638781
Length = 126
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 520 TDGVLTLTPPQ-WIQCDLRYLDMTFLGKFAVIMADPPWD 633
TD +L LT PQ W+ + +L+M L K V+ P WD
Sbjct: 2 TDLMLRLTGPQMWVTPESPFLEMPSLRKLLVVDMPPRWD 40
>11_06_0028 -
19393700-19393899,19394058-19394116,19394437-19394521,
19395305-19395474,19397534-19397613,19398288-19398392,
19399268-19399308,19399400-19399438,19400473-19400818,
19401762-19401815,19402249-19402350
Length = 426
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 25 APKXVYRGKRSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFKS 204
+P +Y G L R + LLA + E A+ ++ ++++D+L K K +S
Sbjct: 298 SPSTIY-GAEHLLRLFVKLPELLASVNMEEDALNKLQQKLLDIL-KFLQKNQSSFFLSAY 355
Query: 205 QGGAQVMEFCPHGTR 249
GG++ F +GTR
Sbjct: 356 DGGSKAEGFLKYGTR 370
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 585 HVQISKVALYPLRRRQSQN-TVCIQALRYRTCTILHR 478
H I LY L +QN T+C+ AL RTCT +H+
Sbjct: 165 HYFIGLKILYHLVGEMNQNCTMCLLALINRTCTYIHK 201
>11_06_0157 - 20754134-20755085,20755311-20755642
Length = 427
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 230 SVRTAPELNVVELSAPIVHKTVPLTPAKSYISKRSY 337
++ +A E++ +LSAP V + V L K+YI + Y
Sbjct: 175 ALNSAGEVHAFDLSAPTVTQKVVLEDVKAYIEENMY 210
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 695 VSRGTASRRPTWCHRAAPIWISQGGSAIITANLPKN 588
V+ T RRPTW P+ Q G A+ P+N
Sbjct: 489 VTGSTPHRRPTWTPARTPVSSFQRGRAVTMTPTPQN 524
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 520 TDGVLTLTPPQ-WIQCDLRYLDMTFLGKFAVIMADPPWD 633
TD L LT PQ W+ + +L+M L + V P WD
Sbjct: 488 TDLALRLTGPQMWVVPESPFLEMPSLRRLLVADVPPRWD 526
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 193 KFKSQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLHFKKIIQGHTDETLGDCS 372
K KS+G +V + G A R + TTN C+ + + + H DE
Sbjct: 651 KKKSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEENQVIDHEDEVPFPRR 710
Query: 373 FLNTC 387
F +TC
Sbjct: 711 FCHTC 715
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +1
Query: 85 SLLAMPSSREKAVKRVGEEIMDLLSKPTAKE--RSLADKFKSQGGAQVMEFCPHGTRAEC 258
S P+S E+A + + EE++ LL AK K K +G + P E
Sbjct: 585 STFVPPTSLEQADELINEELLRLLEHDNAKYPLDEKTQKDKKKGSKRQANGTPSVPEIE- 643
Query: 259 GRAISPDSAQDGTTNTCKKLHFKKIIQGHTDETLGD 366
D ++ + +++ + ++ GH E+L D
Sbjct: 644 --DFDEDELKEANSMLEEEVQYLRVAMGHESESLED 677
>03_02_0336 +
7583779-7583856,7583939-7584022,7584207-7584258,
7584367-7584523,7585974-7585995
Length = 130
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 469 LTKSVQNGTSSISKCLNTDGV--LTLTPPQWIQCDLRYLD 582
+T + G + +S C+N DGV LT T Q RYLD
Sbjct: 83 VTVVIGGGETEVSNCVNCDGVGSLTCTTCQGSGIQPRYLD 122
>02_05_1317 -
35683659-35683756,35683904-35683966,35684068-35684182,
35684385-35684486,35684687-35684756,35684878-35684952,
35685188-35685279,35685386-35685493,35685560-35685640,
35685728-35685771,35685858-35685984
Length = 324
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 632 SQGGSAIITANLPKNVMSKYLRSH-CIHCGGVRVKTPSVFKHFD 504
S A+ + P+NV + H CI C R P VFK D
Sbjct: 21 SASSPALDSGRRPQNVPGDFFVDHRCIDCQTCRWMAPEVFKRVD 64
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 602 NLPKNVMSKYLRSHCIHCGGV 540
NLP NV +YLR HCG V
Sbjct: 570 NLPANVTEEYLRKLFEHCGEV 590
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 212 VLK*WSSVRTAPELNVVELSAPIVHKTVPLTPAKSYISKRSYR 340
VLK W S RTA E L+A + VP+ KR YR
Sbjct: 66 VLKGWPSCRTAQEAASAALAATRLPMPVPVVEKAPLPPKRIYR 108
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 495 CTILHRLRQRLHCLSVRIWIGVIH 424
C + HR Q + CLS R W+G IH
Sbjct: 715 CIVSHR--QAMLCLSSRPWLGYIH 736
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,082,193
Number of Sequences: 37544
Number of extensions: 434478
Number of successful extensions: 1211
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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