Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0978
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044) 59 4e-09
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.39
SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) 30 1.6
SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 29 3.6
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_21202| Best HMM Match : WD40 (HMM E-Value=0.72) 29 4.8
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 29 4.8
SB_36191| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12) 28 6.3
SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044)
Length = 224
Score = 58.8 bits (136), Expect = 4e-09
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 550 QWIQCDLRYLDMTFLGKFAVIMADPPWDIHM 642
+WI CD+R L M LGKF+VIMADPPWDIHM
Sbjct: 80 EWISCDVRSLQMDVLGKFSVIMADPPWDIHM 110
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 451 CSHLDRCYPLRNERTCSCPY 392
C H CYPL NE C CP+
Sbjct: 1992 CLHGGTCYPLSNEYACVCPF 2011
>SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = -2
Query: 456 LSVRIWIGV-IHFVMNVLA--AVHMKARVQE*TVTQ---GFVGVTLYDLFEM*LFAGVSG 295
L + I IGV + FV+ LA V+ +E T T G +G + +M + +
Sbjct: 27 LLILIVIGVFVGFVIGFLANGPVNRIQSPEEKTTTIILIGLLGELFMAMLKMLILPLIMA 86
Query: 294 TVLCTIGA-DSSTTFSSGAVRTELHYLSTSL 205
+++C +G DSS T G RT L+YL T+L
Sbjct: 87 SLICALGVLDSSATGKIGR-RTVLYYLCTTL 116
>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
Length = 1189
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/100 (26%), Positives = 40/100 (40%)
Frame = +1
Query: 22 KAPKXVYRGKRSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFK 201
KA R K S R+ + I E +VKR S+ ++ +S +D
Sbjct: 877 KAKHKNQRPKASQRRSRKDIKECPTKKDEPELSVKRTKSIFRQNRSESRSRSQS-SDTSS 935
Query: 202 SQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLH 321
++ G Q E PH T ++ S AQ+G KL+
Sbjct: 936 NEIGHQAEEMTPHKTPSDSELTASIADAQEGKIKGSNKLN 975
>SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 115 KAVKRVGEEIMDLLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISP 276
KA + EE D KE + +F+ + GA+++ C H A + +SP
Sbjct: 48 KAASNLQEEGPDFEVIDNCKESKVVCEFEFKNGAELIRHCDHCNEASATQLVSP 101
>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 436 DPNANTKTVEALTKSVQNGTSSISKCLNTDGV-LTLTPPQWIQCDLRYLDMTFLGKFAVI 612
D N K + T+ I+K LN V + + P QC LRY+D +F +
Sbjct: 150 DAQLNPKKKNPAVTNTLLWTTCINKMLNLFQVYMIINLPSIKQCWLRYMDSYNKNEFVIK 209
Query: 613 MADPPWDIHMGAA 651
+ IH+G A
Sbjct: 210 FMKQRYMIHIGLA 222
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 254 NVVELSAPIVHKTVPLTPAKSYISKRS 334
NV LS+P+ +T+PLTP +S+RS
Sbjct: 672 NVRALSSPMRARTLPLTPRPPLLSRRS 698
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 451 CSHLDRCYPLRNERTCSCPYESTC 380
C+ +C+PL + T PY+S C
Sbjct: 101 CTRSKQCFPLSRDSTKGSPYDSVC 124
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +1
Query: 361 GDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKC 513
G CSFLN C S Y PN+N T S + SKC
Sbjct: 487 GSCSFLNNC---SSANYTSCANATAAPNSNCSLSTNSTASANTTAAPDSKC 534
>SB_21202| Best HMM Match : WD40 (HMM E-Value=0.72)
Length = 360
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 548 GGVRVKTPSVFKHFDIELVPFCTDFVSASTVLVFAFGSVL 429
GGVR+ TP+ F+H D L+ D ST L F L
Sbjct: 187 GGVRIFTPAKFEHPDSTLLSESGDTKFVSTCLSFPSNDTL 226
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1
Query: 337 QGHTDETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCL 516
Q H G S N+C + D K Y+V + PN T VQ G+ +++C+
Sbjct: 211 QVHERGCCGSTSSTNSCPNTDGVKGGSYQVRESCPN---------TDGVQGGSYQVNECI 261
Query: 517 NTDGVLTLTPPQ 552
+ V+ L Q
Sbjct: 262 RFNDVIFLCKSQ 273
>SB_36191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 548 GGVRVKTPSVFKHFDIELVPFCTDFVSASTVLVFAFGSVL 429
GGVR+ TP+ F+H D L+ D ST L F L
Sbjct: 194 GGVRIFTPAKFEHPDSTLLSESGDTKFVSTCLSFPSNDTL 233
>SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)
Length = 640
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 220 VMEFCPHGTRAEC---GRAISPDSAQDGTTNTCKKLHF 324
VME+CP+G E GR I+P+ TT +H+
Sbjct: 175 VMEYCPYGQLFEVLRDGREITPELLVGWTTQIADGMHY 212
>SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 317 NFLQVLVVPSCALSGLIALPHSALVPCGQNS 225
+F V+ + AL LIAL H L P G+NS
Sbjct: 8 SFYNVVTGKTLALPNLIALQHIPLSPAGRNS 38
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 2/144 (1%)
Frame = +1
Query: 151 LLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLHFKK 330
+++KPT + ++ K+ GG + + G + D A+ T+ +
Sbjct: 2892 VMAKPTNLQPKISYLSKNYGGDRGISLAETGLDTKQPTCKEDDIAR---THIARNKTLAG 2948
Query: 331 IIQGHTDETLGDCS--FLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSI 504
++ T + LG F +CF D C + N D +T + + T +
Sbjct: 2949 GLEAGTFKFLGKVKNCFAISCFSPDLCHVTDFPTSNGDVEISTMVKTVKKEKLPEETHKL 3008
Query: 505 SKCLNTDGVLTLTPPQWIQCDLRY 576
+ D T +P +Q D +
Sbjct: 3009 KLDFHKDSFATASPYSSLQEDFSH 3032
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,066,216
Number of Sequences: 59808
Number of extensions: 501954
Number of successful extensions: 1607
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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