BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0978 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044) 59 4e-09 SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.39 SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) 30 1.6 SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 29 3.6 SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_21202| Best HMM Match : WD40 (HMM E-Value=0.72) 29 4.8 SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 29 4.8 SB_36191| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12) 28 6.3 SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044) Length = 224 Score = 58.8 bits (136), Expect = 4e-09 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = +1 Query: 550 QWIQCDLRYLDMTFLGKFAVIMADPPWDIHM 642 +WI CD+R L M LGKF+VIMADPPWDIHM Sbjct: 80 EWISCDVRSLQMDVLGKFSVIMADPPWDIHM 110 >SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) Length = 2204 Score = 32.3 bits (70), Expect = 0.39 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 451 CSHLDRCYPLRNERTCSCPY 392 C H CYPL NE C CP+ Sbjct: 1992 CLHGGTCYPLSNEYACVCPF 2011 >SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 279 Score = 30.7 bits (66), Expect = 1.2 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Frame = -2 Query: 456 LSVRIWIGV-IHFVMNVLA--AVHMKARVQE*TVTQ---GFVGVTLYDLFEM*LFAGVSG 295 L + I IGV + FV+ LA V+ +E T T G +G + +M + + Sbjct: 27 LLILIVIGVFVGFVIGFLANGPVNRIQSPEEKTTTIILIGLLGELFMAMLKMLILPLIMA 86 Query: 294 TVLCTIGA-DSSTTFSSGAVRTELHYLSTSL 205 +++C +G DSS T G RT L+YL T+L Sbjct: 87 SLICALGVLDSSATGKIGR-RTVLYYLCTTL 116 >SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) Length = 1189 Score = 30.3 bits (65), Expect = 1.6 Identities = 26/100 (26%), Positives = 40/100 (40%) Frame = +1 Query: 22 KAPKXVYRGKRSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFK 201 KA R K S R+ + I E +VKR S+ ++ +S +D Sbjct: 877 KAKHKNQRPKASQRRSRKDIKECPTKKDEPELSVKRTKSIFRQNRSESRSRSQS-SDTSS 935 Query: 202 SQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLH 321 ++ G Q E PH T ++ S AQ+G KL+ Sbjct: 936 NEIGHQAEEMTPHKTPSDSELTASIADAQEGKIKGSNKLN 975 >SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 267 Score = 30.3 bits (65), Expect = 1.6 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +1 Query: 115 KAVKRVGEEIMDLLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISP 276 KA + EE D KE + +F+ + GA+++ C H A + +SP Sbjct: 48 KAASNLQEEGPDFEVIDNCKESKVVCEFEFKNGAELIRHCDHCNEASATQLVSP 101 >SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 271 Score = 29.5 bits (63), Expect = 2.7 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Frame = +1 Query: 436 DPNANTKTVEALTKSVQNGTSSISKCLNTDGV-LTLTPPQWIQCDLRYLDMTFLGKFAVI 612 D N K + T+ I+K LN V + + P QC LRY+D +F + Sbjct: 150 DAQLNPKKKNPAVTNTLLWTTCINKMLNLFQVYMIINLPSIKQCWLRYMDSYNKNEFVIK 209 Query: 613 MADPPWDIHMGAA 651 + IH+G A Sbjct: 210 FMKQRYMIHIGLA 222 >SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) Length = 711 Score = 29.1 bits (62), Expect = 3.6 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 254 NVVELSAPIVHKTVPLTPAKSYISKRS 334 NV LS+P+ +T+PLTP +S+RS Sbjct: 672 NVRALSSPMRARTLPLTPRPPLLSRRS 698 >SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2988 Score = 28.7 bits (61), Expect = 4.8 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -1 Query: 451 CSHLDRCYPLRNERTCSCPYESTC 380 C+ +C+PL + T PY+S C Sbjct: 101 CTRSKQCFPLSRDSTKGSPYDSVC 124 >SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2630 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/51 (33%), Positives = 19/51 (37%) Frame = +1 Query: 361 GDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKC 513 G CSFLN C S Y PN+N T S + SKC Sbjct: 487 GSCSFLNNC---SSANYTSCANATAAPNSNCSLSTNSTASANTTAAPDSKC 534 >SB_21202| Best HMM Match : WD40 (HMM E-Value=0.72) Length = 360 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 548 GGVRVKTPSVFKHFDIELVPFCTDFVSASTVLVFAFGSVL 429 GGVR+ TP+ F+H D L+ D ST L F L Sbjct: 187 GGVRIFTPAKFEHPDSTLLSESGDTKFVSTCLSFPSNDTL 226 >SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) Length = 515 Score = 28.7 bits (61), Expect = 4.8 Identities = 20/72 (27%), Positives = 31/72 (43%) Frame = +1 Query: 337 QGHTDETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCL 516 Q H G S N+C + D K Y+V + PN T VQ G+ +++C+ Sbjct: 211 QVHERGCCGSTSSTNSCPNTDGVKGGSYQVRESCPN---------TDGVQGGSYQVNECI 261 Query: 517 NTDGVLTLTPPQ 552 + V+ L Q Sbjct: 262 RFNDVIFLCKSQ 273 >SB_36191| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 361 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 548 GGVRVKTPSVFKHFDIELVPFCTDFVSASTVLVFAFGSVL 429 GGVR+ TP+ F+H D L+ D ST L F L Sbjct: 194 GGVRIFTPAKFEHPDSTLLSESGDTKFVSTCLSFPSNDTL 233 >SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12) Length = 640 Score = 28.3 bits (60), Expect = 6.3 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +1 Query: 220 VMEFCPHGTRAEC---GRAISPDSAQDGTTNTCKKLHF 324 VME+CP+G E GR I+P+ TT +H+ Sbjct: 175 VMEYCPYGQLFEVLRDGREITPELLVGWTTQIADGMHY 212 >SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 76 Score = 28.3 bits (60), Expect = 6.3 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 317 NFLQVLVVPSCALSGLIALPHSALVPCGQNS 225 +F V+ + AL LIAL H L P G+NS Sbjct: 8 SFYNVVTGKTLALPNLIALQHIPLSPAGRNS 38 >SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3051 Score = 27.9 bits (59), Expect = 8.4 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 2/144 (1%) Frame = +1 Query: 151 LLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLHFKK 330 +++KPT + ++ K+ GG + + G + D A+ T+ + Sbjct: 2892 VMAKPTNLQPKISYLSKNYGGDRGISLAETGLDTKQPTCKEDDIAR---THIARNKTLAG 2948 Query: 331 IIQGHTDETLGDCS--FLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSI 504 ++ T + LG F +CF D C + N D +T + + T + Sbjct: 2949 GLEAGTFKFLGKVKNCFAISCFSPDLCHVTDFPTSNGDVEISTMVKTVKKEKLPEETHKL 3008 Query: 505 SKCLNTDGVLTLTPPQWIQCDLRY 576 + D T +P +Q D + Sbjct: 3009 KLDFHKDSFATASPYSSLQEDFSH 3032 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,066,216 Number of Sequences: 59808 Number of extensions: 501954 Number of successful extensions: 1607 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1434 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1606 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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