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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0978
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044)                 59   4e-09
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    32   0.39 
SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     30   1.6  
SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)                    29   3.6  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_21202| Best HMM Match : WD40 (HMM E-Value=0.72)                     29   4.8  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   29   4.8  
SB_36191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)           28   6.3  
SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044)
          Length = 224

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 550 QWIQCDLRYLDMTFLGKFAVIMADPPWDIHM 642
           +WI CD+R L M  LGKF+VIMADPPWDIHM
Sbjct: 80  EWISCDVRSLQMDVLGKFSVIMADPPWDIHM 110


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 451  CSHLDRCYPLRNERTCSCPY 392
            C H   CYPL NE  C CP+
Sbjct: 1992 CLHGGTCYPLSNEYACVCPF 2011


>SB_30964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
 Frame = -2

Query: 456 LSVRIWIGV-IHFVMNVLA--AVHMKARVQE*TVTQ---GFVGVTLYDLFEM*LFAGVSG 295
           L + I IGV + FV+  LA   V+     +E T T    G +G     + +M +   +  
Sbjct: 27  LLILIVIGVFVGFVIGFLANGPVNRIQSPEEKTTTIILIGLLGELFMAMLKMLILPLIMA 86

Query: 294 TVLCTIGA-DSSTTFSSGAVRTELHYLSTSL 205
           +++C +G  DSS T   G  RT L+YL T+L
Sbjct: 87  SLICALGVLDSSATGKIGR-RTVLYYLCTTL 116


>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/100 (26%), Positives = 40/100 (40%)
 Frame = +1

Query: 22   KAPKXVYRGKRSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFK 201
            KA     R K S  R+ + I          E +VKR         S+  ++ +S +D   
Sbjct: 877  KAKHKNQRPKASQRRSRKDIKECPTKKDEPELSVKRTKSIFRQNRSESRSRSQS-SDTSS 935

Query: 202  SQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLH 321
            ++ G Q  E  PH T ++     S   AQ+G      KL+
Sbjct: 936  NEIGHQAEEMTPHKTPSDSELTASIADAQEGKIKGSNKLN 975


>SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 115 KAVKRVGEEIMDLLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISP 276
           KA   + EE  D       KE  +  +F+ + GA+++  C H   A   + +SP
Sbjct: 48  KAASNLQEEGPDFEVIDNCKESKVVCEFEFKNGAELIRHCDHCNEASATQLVSP 101


>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 436 DPNANTKTVEALTKSVQNGTSSISKCLNTDGV-LTLTPPQWIQCDLRYLDMTFLGKFAVI 612
           D   N K       +    T+ I+K LN   V + +  P   QC LRY+D     +F + 
Sbjct: 150 DAQLNPKKKNPAVTNTLLWTTCINKMLNLFQVYMIINLPSIKQCWLRYMDSYNKNEFVIK 209

Query: 613 MADPPWDIHMGAA 651
                + IH+G A
Sbjct: 210 FMKQRYMIHIGLA 222


>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
          Length = 711

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 254 NVVELSAPIVHKTVPLTPAKSYISKRS 334
           NV  LS+P+  +T+PLTP    +S+RS
Sbjct: 672 NVRALSSPMRARTLPLTPRPPLLSRRS 698


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 451 CSHLDRCYPLRNERTCSCPYESTC 380
           C+   +C+PL  + T   PY+S C
Sbjct: 101 CTRSKQCFPLSRDSTKGSPYDSVC 124


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +1

Query: 361 GDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKC 513
           G CSFLN C    S  Y         PN+N       T S     +  SKC
Sbjct: 487 GSCSFLNNC---SSANYTSCANATAAPNSNCSLSTNSTASANTTAAPDSKC 534


>SB_21202| Best HMM Match : WD40 (HMM E-Value=0.72)
          Length = 360

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 548 GGVRVKTPSVFKHFDIELVPFCTDFVSASTVLVFAFGSVL 429
           GGVR+ TP+ F+H D  L+    D    ST L F     L
Sbjct: 187 GGVRIFTPAKFEHPDSTLLSESGDTKFVSTCLSFPSNDTL 226


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 337 QGHTDETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCL 516
           Q H     G  S  N+C + D  K   Y+V  + PN         T  VQ G+  +++C+
Sbjct: 211 QVHERGCCGSTSSTNSCPNTDGVKGGSYQVRESCPN---------TDGVQGGSYQVNECI 261

Query: 517 NTDGVLTLTPPQ 552
             + V+ L   Q
Sbjct: 262 RFNDVIFLCKSQ 273


>SB_36191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 548 GGVRVKTPSVFKHFDIELVPFCTDFVSASTVLVFAFGSVL 429
           GGVR+ TP+ F+H D  L+    D    ST L F     L
Sbjct: 194 GGVRIFTPAKFEHPDSTLLSESGDTKFVSTCLSFPSNDTL 233


>SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)
          Length = 640

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 220 VMEFCPHGTRAEC---GRAISPDSAQDGTTNTCKKLHF 324
           VME+CP+G   E    GR I+P+     TT     +H+
Sbjct: 175 VMEYCPYGQLFEVLRDGREITPELLVGWTTQIADGMHY 212


>SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 317 NFLQVLVVPSCALSGLIALPHSALVPCGQNS 225
           +F  V+   + AL  LIAL H  L P G+NS
Sbjct: 8   SFYNVVTGKTLALPNLIALQHIPLSPAGRNS 38


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 2/144 (1%)
 Frame = +1

Query: 151  LLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISPDSAQDGTTNTCKKLHFKK 330
            +++KPT  +  ++   K+ GG + +     G   +       D A+   T+  +      
Sbjct: 2892 VMAKPTNLQPKISYLSKNYGGDRGISLAETGLDTKQPTCKEDDIAR---THIARNKTLAG 2948

Query: 331  IIQGHTDETLGDCS--FLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSI 504
             ++  T + LG     F  +CF  D C    +   N D   +T       + +   T  +
Sbjct: 2949 GLEAGTFKFLGKVKNCFAISCFSPDLCHVTDFPTSNGDVEISTMVKTVKKEKLPEETHKL 3008

Query: 505  SKCLNTDGVLTLTPPQWIQCDLRY 576
                + D   T +P   +Q D  +
Sbjct: 3009 KLDFHKDSFATASPYSSLQEDFSH 3032


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,066,216
Number of Sequences: 59808
Number of extensions: 501954
Number of successful extensions: 1607
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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