Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0978
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    27   0.75 
AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    26   1.3  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   4.0  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   4.0  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   7.0  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    23   7.0  

>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 565 RTVSTAEASESKHRLYSSTSISNLYHFAQTSSAPPLS*CSHLDRCYPLRNERTCSCPYES 386
           R  +   A+ ++HR Y++ + +  +  A  +S PP    +   +C+P  N+ T   P  +
Sbjct: 304 RFTTRTPATSTEHR-YTTRTPTTTHRLAARTSTPPDPETTSSQQCHPPVND-TLEAPNST 361

Query: 385 TCSG 374
             SG
Sbjct: 362 LVSG 365


>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydrogenase
            protein.
          Length = 1325

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 412  VHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCL 516
            +H    +TD   NT    A   S  NGT+ ++ CL
Sbjct: 1052 IHISETSTDKVPNTSATAASAGSDLNGTAVLNACL 1086


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 471  DEVCAKWYKFDI 506
            D++CA WYK DI
Sbjct: 2332 DQLCAGWYKDDI 2343


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 471  DEVCAKWYKFDI 506
            D++CA WYK DI
Sbjct: 2333 DQLCAGWYKDDI 2344


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 698 AVSRGTASRRPTWCHRAAP---IWISQ 627
           A +  TASR   W HR  P   +W+S+
Sbjct: 890 AAAAPTASRYAVWAHRMIPDLHLWMSR 916


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 391 HMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNG-TSSISKCLNTDGVLTLTPPQWIQCD 567
           H   CKY   + +     A  + V AL  +++   T    + LN +G +   PP+   CD
Sbjct: 56  HKRYCKYRACQCEKCCLTAERQRVMALQTALRRAQTQDEQRALN-EGEVPPEPPRSFDCD 114


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 391 HMDSCKYVHYEVDNTDPNANTKTVEALTKSVQNG-TSSISKCLNTDGVLTLTPPQWIQCD 567
           H   CKY   + +     A  + V AL  +++   T    + LN +G +   PP+   CD
Sbjct: 56  HKRYCKYRACQCEKCCLTAERQRVMALQTALRRAQTQDEQRALN-EGEVPPEPPRSFDCD 114


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,722
Number of Sequences: 2352
Number of extensions: 15627
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)