Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0978
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113286-1|AAM29291.1|  608|Drosophila melanogaster AT20169p pro...   165   4e-41
AE014297-3437|AAF56221.1|  608|Drosophila melanogaster CG5933-PA...   165   4e-41
BT023590-1|AAY84990.1|  269|Drosophila melanogaster IP09370p pro...    32   0.86 
AE014296-3107|AAF49188.1|  269|Drosophila melanogaster CG14079-P...    32   0.86 
AE014296-2697|AAF49491.2|  155|Drosophila melanogaster CG13059-P...    31   2.0  
M27699-1|AAA28842.1| 1462|Drosophila melanogaster protein ( D.me...    29   8.0  
BT001531-1|AAN71286.1| 1461|Drosophila melanogaster RE06719p pro...    29   8.0  
BT001498-1|AAN71253.1|  484|Drosophila melanogaster LD33682p pro...    29   8.0  
AY118308-1|AAM48337.1|  388|Drosophila melanogaster GH12861p pro...    29   8.0  
AY051688-1|AAK93112.1|  477|Drosophila melanogaster LD23642p pro...    29   8.0  
AF079101-1|AAD12369.1|  477|Drosophila melanogaster arginine-tRN...    29   8.0  
AE014296-2171|AAO41254.1| 1461|Drosophila melanogaster CG10975-P...    29   8.0  
AE014296-2170|AAF49892.2| 1462|Drosophila melanogaster CG10975-P...    29   8.0  
AE014134-3111|AAF53811.1|  405|Drosophila melanogaster CG10189-P...    29   8.0  
AE013599-2977|AAF57497.3|  484|Drosophila melanogaster CG9204-PB...    29   8.0  
AE013599-2976|AAF57498.2|  478|Drosophila melanogaster CG9204-PC...    29   8.0  
AE013599-2975|AAF57496.3|  477|Drosophila melanogaster CG9204-PA...    29   8.0  

>AY113286-1|AAM29291.1|  608|Drosophila melanogaster AT20169p
           protein.
          Length = 608

 Score =  165 bits (402), Expect = 4e-41
 Identities = 80/123 (65%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
 Frame = +1

Query: 277 DSAQDGTTNTCKKLHFKKIIQGHTDETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANT- 453
           D+    TT+ C KLHFKKIIQ HTDE+LGDCSFLNTCFHM +CKYVHYEVD T P+ NT 
Sbjct: 307 DTCSSETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATCKYVHYEVD-TLPHINTN 365

Query: 454 KTVEALTKSVQNGTSSISKCLNTDGVLTLTPPQWIQCDLRYLDMTFLGKFAVIMADPPWD 633
           K  +  TK        +S   + D   TL PPQWIQCDLR+LDMT LGKFAV+MADPPWD
Sbjct: 366 KPTDVKTK--------LSLKRSVDSSCTLYPPQWIQCDLRFLDMTVLGKFAVVMADPPWD 417

Query: 634 IHM 642
           IHM
Sbjct: 418 IHM 420



 Score =  103 bits (247), Expect = 2e-22
 Identities = 50/82 (60%), Positives = 62/82 (75%)
 Frame = +1

Query: 22  KAPKXVYRGKRSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFK 201
           K    V R + +   A   IM LL+MPS+REK  K+VGEEI++LL+KPTAKERS+A+KFK
Sbjct: 159 KLESTVARKESTSLDAPDDIMMLLSMPSTREKQSKQVGEEILELLTKPTAKERSVAEKFK 218

Query: 202 SQGGAQVMEFCPHGTRAECGRA 267
           S GGAQVMEFC HGT+ EC +A
Sbjct: 219 SHGGAQVMEFCSHGTKVECLKA 240



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 644 ELPYGTMSDDEMRCLGIP 697
           ELPYGTMSDDEMR LG+P
Sbjct: 421 ELPYGTMSDDEMRALGVP 438


>AE014297-3437|AAF56221.1|  608|Drosophila melanogaster CG5933-PA
           protein.
          Length = 608

 Score =  165 bits (402), Expect = 4e-41
 Identities = 80/123 (65%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
 Frame = +1

Query: 277 DSAQDGTTNTCKKLHFKKIIQGHTDETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANT- 453
           D+    TT+ C KLHFKKIIQ HTDE+LGDCSFLNTCFHM +CKYVHYEVD T P+ NT 
Sbjct: 307 DTCSSETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATCKYVHYEVD-TLPHINTN 365

Query: 454 KTVEALTKSVQNGTSSISKCLNTDGVLTLTPPQWIQCDLRYLDMTFLGKFAVIMADPPWD 633
           K  +  TK        +S   + D   TL PPQWIQCDLR+LDMT LGKFAV+MADPPWD
Sbjct: 366 KPTDVKTK--------LSLKRSVDSSCTLYPPQWIQCDLRFLDMTVLGKFAVVMADPPWD 417

Query: 634 IHM 642
           IHM
Sbjct: 418 IHM 420



 Score =  103 bits (247), Expect = 2e-22
 Identities = 50/82 (60%), Positives = 62/82 (75%)
 Frame = +1

Query: 22  KAPKXVYRGKRSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFK 201
           K    V R + +   A   IM LL+MPS+REK  K+VGEEI++LL+KPTAKERS+A+KFK
Sbjct: 159 KLESTVARKESTSLDAPDDIMMLLSMPSTREKQSKQVGEEILELLTKPTAKERSVAEKFK 218

Query: 202 SQGGAQVMEFCPHGTRAECGRA 267
           S GGAQVMEFC HGT+ EC +A
Sbjct: 219 SHGGAQVMEFCSHGTKVECLKA 240



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 644 ELPYGTMSDDEMRCLGIP 697
           ELPYGTMSDDEMR LG+P
Sbjct: 421 ELPYGTMSDDEMRALGVP 438


>BT023590-1|AAY84990.1|  269|Drosophila melanogaster IP09370p
           protein.
          Length = 269

 Score = 31.9 bits (69), Expect = 0.86
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 565 RTVSTAEASESKHRLYSSTSISNLYHFAQTSSAPPLS*CSHLDRCYPLRNERTCSC 398
           R  S A+  + + RL S +S + L   +Q+SS   L+ CSHL  C    +E   SC
Sbjct: 204 RAGSPAQQKQQERRLSSCSSTTQLSSLSQSSS---LTQCSHLSSCSSPLDEHHNSC 256


>AE014296-3107|AAF49188.1|  269|Drosophila melanogaster CG14079-PA
           protein.
          Length = 269

 Score = 31.9 bits (69), Expect = 0.86
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 565 RTVSTAEASESKHRLYSSTSISNLYHFAQTSSAPPLS*CSHLDRCYPLRNERTCSC 398
           R  S A+  + + RL S +S + L   +Q+SS   L+ CSHL  C    +E   SC
Sbjct: 204 RAGSPAQQKQQERRLSSCSSTTQLSSLSQSSS---LTQCSHLSSCSSPLDEHHNSC 256


>AE014296-2697|AAF49491.2|  155|Drosophila melanogaster CG13059-PA
           protein.
          Length = 155

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 233 VRTAPELNVVELSAPIVHKTVPLTP-AKSYISKRSY--RVTPTKPWV-TVHS 376
           +  AP L  V  SAP+VH  VP  P  K+ I        V P  P V TVHS
Sbjct: 94  IPAAPVLKTVVSSAPLVHTVVPAAPLVKTVIPAAPVIKTVIPAAPLVHTVHS 145


>M27699-1|AAA28842.1| 1462|Drosophila melanogaster protein (
           D.melanogaster proteintyrosine phosphatase (DPTP) mRNA,
           complete cds. ).
          Length = 1462

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 427 DNTDPNAN-TKTVEALTKSVQNGTSSISKCL---NTDGVLTLTPPQWIQCDLRYLDMTFL 594
           ++  PN N T TV A+T+  +NG  +   CL   +T   +  T    +  D +Y+   +L
Sbjct: 509 ESVSPNTNYTVTVSAITRHKKNGEPATGSCLMPVSTPDAIGRTMWSKVNLDSKYVLKLYL 568

Query: 595 GKFA 606
            K +
Sbjct: 569 PKIS 572


>BT001531-1|AAN71286.1| 1461|Drosophila melanogaster RE06719p
           protein.
          Length = 1461

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 427 DNTDPNAN-TKTVEALTKSVQNGTSSISKCL---NTDGVLTLTPPQWIQCDLRYLDMTFL 594
           ++  PN N T TV A+T+  +NG  +   CL   +T   +  T    +  D +Y+   +L
Sbjct: 509 ESVSPNTNYTVTVSAITRHKKNGEPATGSCLMPVSTPDAIGRTMWSKVNLDSKYVLKLYL 568

Query: 595 GKFA 606
            K +
Sbjct: 569 PKIS 572


>BT001498-1|AAN71253.1|  484|Drosophila melanogaster LD33682p
           protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 433 CYPLRNERTCSCP-YESTCSGM 371
           CY LRN+ TC CP Y   C+G+
Sbjct: 55  CYKLRNQETC-CPCYTIKCNGL 75


>AY118308-1|AAM48337.1|  388|Drosophila melanogaster GH12861p
           protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 2   EXXHQLQKLLXMSTEXKEVWQERHXILCPF*RCLQ 106
           E  H+LQKL  ++     + Q+R  ++C   +CLQ
Sbjct: 158 ELIHKLQKLRSLTARQDYLQQQRKNLICSVAQCLQ 192


>AY051688-1|AAK93112.1|  477|Drosophila melanogaster LD23642p
           protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 433 CYPLRNERTCSCP-YESTCSGM 371
           CY LRN+ TC CP Y   C+G+
Sbjct: 55  CYKLRNQETC-CPCYTIKCNGL 75


>AF079101-1|AAD12369.1|  477|Drosophila melanogaster
           arginine-tRNA-protein transferase1 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 433 CYPLRNERTCSCP-YESTCSGM 371
           CY LRN+ TC CP Y   C+G+
Sbjct: 55  CYKLRNQETC-CPCYTIKCNGL 75


>AE014296-2171|AAO41254.1| 1461|Drosophila melanogaster CG10975-PB,
           isoform B protein.
          Length = 1461

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 427 DNTDPNAN-TKTVEALTKSVQNGTSSISKCL---NTDGVLTLTPPQWIQCDLRYLDMTFL 594
           ++  PN N T TV A+T+  +NG  +   CL   +T   +  T    +  D +Y+   +L
Sbjct: 509 ESVSPNTNYTVTVSAITRHKKNGEPATGSCLMPVSTPDAIGRTMWSKVNLDSKYVLKLYL 568

Query: 595 GKFA 606
            K +
Sbjct: 569 PKIS 572


>AE014296-2170|AAF49892.2| 1462|Drosophila melanogaster CG10975-PA,
           isoform A protein.
          Length = 1462

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 427 DNTDPNAN-TKTVEALTKSVQNGTSSISKCL---NTDGVLTLTPPQWIQCDLRYLDMTFL 594
           ++  PN N T TV A+T+  +NG  +   CL   +T   +  T    +  D +Y+   +L
Sbjct: 509 ESVSPNTNYTVTVSAITRHKKNGEPATGSCLMPVSTPDAIGRTMWSKVNLDSKYVLKLYL 568

Query: 595 GKFA 606
            K +
Sbjct: 569 PKIS 572


>AE014134-3111|AAF53811.1|  405|Drosophila melanogaster CG10189-PA
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 2   EXXHQLQKLLXMSTEXKEVWQERHXILCPF*RCLQ 106
           E  H+LQKL  ++     + Q+R  ++C   +CLQ
Sbjct: 175 ELIHKLQKLRSLTARQDYLQQQRKNLICSVAQCLQ 209


>AE013599-2977|AAF57497.3|  484|Drosophila melanogaster CG9204-PB,
           isoform B protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 433 CYPLRNERTCSCP-YESTCSGM 371
           CY LRN+ TC CP Y   C+G+
Sbjct: 55  CYKLRNQETC-CPCYTIKCNGL 75


>AE013599-2976|AAF57498.2|  478|Drosophila melanogaster CG9204-PC,
           isoform C protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 433 CYPLRNERTCSCP-YESTCSGM 371
           CY LRN+ TC CP Y   C+G+
Sbjct: 55  CYKLRNQETC-CPCYTIKCNGL 75


>AE013599-2975|AAF57496.3|  477|Drosophila melanogaster CG9204-PA,
           isoform A protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 433 CYPLRNERTCSCP-YESTCSGM 371
           CY LRN+ TC CP Y   C+G+
Sbjct: 55  CYKLRNQETC-CPCYTIKCNGL 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,982,641
Number of Sequences: 53049
Number of extensions: 721561
Number of successful extensions: 2261
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2258
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)