Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0978
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 421 EVDNTDPNANTKTVEALTK 477
           +VD T PNA  + V+ +TK
Sbjct: 378 QVDPTAPNAEERRVQGVTK 396


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 421 EVDNTDPNANTKTVEALTK 477
           +VD T PNA  + V+ +TK
Sbjct: 293 QVDPTAPNAEERRVQGVTK 311


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 421 EVDNTDPNANTKTVEALTK 477
           +VD T PNA  + V+ +TK
Sbjct: 612 QVDPTAPNAEERRVQGVTK 630


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 490 HFAQTSSAPPLS*CSHLDRCYPLRNERTCSCPYESTCSG 374
           +F +  +   +S  S +++   LRN+++C   Y+ + +G
Sbjct: 468 NFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAG 506


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 490 HFAQTSSAPPLS*CSHLDRCYPLRNERTCSCPYESTCSG 374
           +F +  +   +S  S +++   LRN+++C   Y+ + +G
Sbjct: 468 NFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAG 506


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 490 HFAQTSSAPPLS*CSHLDRCYPLRNERTCSCPYESTCSG 374
           +F +  +   +S  S +++   LRN+++C   Y+ + +G
Sbjct: 468 NFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAG 506


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 83  CPF*RCLQVERKQ*RESVR 139
           CP+ RC+Q  R   RE +R
Sbjct: 4   CPYARCIQERRHIRRELLR 22


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 638 WISQGGSAIITANLPKNVMSKYLRSHCIHC-GGVRVKTPSVFK 513
           WI+ G + +I A   ++    ++R  C  C G VR +    F+
Sbjct: 380 WINSGMNPVIYACWSRDFRRAFVRILCACCPGRVRRRYQPAFR 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,801
Number of Sequences: 438
Number of extensions: 4282
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)