BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0978 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g10760.1 68417.m01756 methyltransferase MT-A70, putative simi... 163 1e-40 At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 31 0.56 At5g18780.1 68418.m02231 F-box family protein contains F-box dom... 30 1.3 At3g09180.1 68416.m01090 expressed protein 30 1.7 At4g33540.1 68417.m04767 metallo-beta-lactamase family protein 29 3.0 At4g20160.1 68417.m02949 expressed protein ; expression supporte... 29 3.0 At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 29 3.9 At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family / di... 29 3.9 At5g09840.1 68418.m01138 expressed protein contains Pfam profile... 28 5.2 At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 28 5.2 At5g39770.1 68418.m04817 repair endonuclease family protein cont... 28 6.8 At3g01270.1 68416.m00033 pectate lyase family protein similar to... 27 9.0 >At4g10760.1 68417.m01756 methyltransferase MT-A70, putative similar to (N6-adenosine)-methyltransferase [Mus musculus] GI:10179948, m6A methyltransferase (MT-A70) [Homo sapiens] GI:2460037; contains Pfam profile PF05063: MT-A70 (S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase)) Length = 685 Score = 163 bits (396), Expect = 1e-40 Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 2/199 (1%) Frame = +1 Query: 52 RSLARATQXIMSLLAMPSSREKAVKRVGEEIMDLLSKPTAKERSLADKFKSQGGAQVMEF 231 RS + + +LL+ S +EK R GEE++DL+ +PTAKE + A KFKS+GG+QV + Sbjct: 311 RSEEEDLKDVEALLSKKSFKEKQQSRTGEELLDLIHRPTAKEAATAAKFKSKGGSQVKYY 370 Query: 232 CPHGTRAECGRAISPDSAQDGTTNTCKKLHFKKIIQGHTDETLGDCSFLNTCFHMDSCKY 411 C + T+ +C Q G+ C K HF+++I HTD +LGDCSFL+TC HM +CKY Sbjct: 371 CRYLTKEDC-------RLQSGSHIACNKRHFRRLIASHTDVSLGDCSFLDTCRHMKTCKY 423 Query: 412 VHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCLNTD--GVLTLTPPQWIQCDLRYLDM 585 VHYE+D D ++ G K L D L QWI CD+R M Sbjct: 424 VHYELDMAD-------------AMMAGPDKALKPLRADYCSEAELGEAQWINCDIRSFRM 470 Query: 586 TFLGKFAVIMADPPWDIHM 642 LG F V+MADPPWDIHM Sbjct: 471 DILGTFGVVMADPPWDIHM 489 Score = 36.3 bits (80), Expect = 0.020 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = +2 Query: 644 ELPYGTMSDDEMRCLGIP 697 ELPYGTM+DDEMR L +P Sbjct: 490 ELPYGTMADDEMRTLNVP 507 >At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER protein [Arabidopsis thaliana] GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair protein Length = 1729 Score = 31.5 bits (68), Expect = 0.56 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Frame = +1 Query: 271 SPDSAQDGTTNTCKKLHF-KKIIQGHTDETLG-----DCSFLNTCFHMDSCKYVHYEVDN 432 S + +D + + ++ +F +K IQ +E L D + +C + SC + + Sbjct: 849 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 908 Query: 433 TDPNANTKTVEALTKSVQNGTSSIS 507 TKTV ++SVQ G+ ++S Sbjct: 909 PTTRCETKTVSGTSQSVQTGSPNLS 933 >At5g18780.1 68418.m02231 F-box family protein contains F-box domain Pfam:PF00646 Length = 441 Score = 30.3 bits (65), Expect = 1.3 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 343 HTDETLGDCSFLNTCF-HMDSCKYVHYEVDN 432 +TD + D S L+ C +D CK H+E++N Sbjct: 88 NTDHDVYDISTLDACLMRLDKCKIQHFEIEN 118 >At3g09180.1 68416.m01090 expressed protein Length = 402 Score = 29.9 bits (64), Expect = 1.7 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 286 VHYRG**LYHIQLWCRADRTPLLEHLLGF*ICQLRTSL*LWACSINPLF 140 +H RG +YH+ L++ LGF SL LW CS +F Sbjct: 302 LHARGFSVYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVF 350 >At4g33540.1 68417.m04767 metallo-beta-lactamase family protein Length = 355 Score = 29.1 bits (62), Expect = 3.0 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +1 Query: 346 TDETLGDCSFLNTCFHMDSCKYVHYEVDNTDPNANTKTVEALTKSVQ-NGTSSISKCLNT 522 T GD NTC D+C+++ ++ N + T + K + N ++ C T Sbjct: 59 TQNVEGDIFVDNTCIDCDTCRWMVPDLFTRVDNMSAVTKQPTCKEERLNALQALLSC-PT 117 Query: 523 DGVLTLTPP 549 + T TPP Sbjct: 118 GSIRTQTPP 126 >At4g20160.1 68417.m02949 expressed protein ; expression supported by MPSS Length = 1188 Score = 29.1 bits (62), Expect = 3.0 Identities = 26/82 (31%), Positives = 38/82 (46%) Frame = +1 Query: 109 REKAVKRVGEEIMDLLSKPTAKERSLADKFKSQGGAQVMEFCPHGTRAECGRAISPDSAQ 288 +E+ + GE+ M L AK ++ KSQ +Q E HG+R S S Q Sbjct: 811 KERNSLQYGEK-MCFLRNSEAKSTKEIERNKSQEVSQGEESASHGSRESAKEKNS--SQQ 867 Query: 289 DGTTNTCKKLHFKKIIQGHTDE 354 D T+T + + KK I+ DE Sbjct: 868 DDETSTHRNPNDKKGIKEPEDE 889 >At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein low similarity to SP|P25583 Karyogamy protein KAR4 {Saccharomyces cerevisiae}, (N6-adenosine)-methyltransferase [Mus musculus] GI:10179948; contains Pfam profile PF05063: MT-A70 (S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase)) Length = 775 Score = 28.7 bits (61), Expect = 3.9 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +1 Query: 547 PQWIQCDLRYLDMT---FLGKFAVIMADPPWDIHMGAA 651 P +++ DL ++++ F KF VI+ DPPW+ ++ A Sbjct: 617 PMYLKGDLHEVELSPELFGTKFDVILVDPPWEEYVHRA 654 >At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family similar to dihydroflavonol 4-reductase (SP:P51102), vestitone reductase (Medicago sativa, GI:973249) Length = 364 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1 Query: 394 MDSCKYVHYEVDNTDPNANTKTVEALTKSVQNGTSSISK-CLNTDGV 531 ++ CK V + DPN+N +T E +TK G I K CL+ V Sbjct: 109 IEGCKAVFHVAHPMDPNSN-ETEETVTKRTVQGLMGILKSCLDAKTV 154 >At5g09840.1 68418.m01138 expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537 Length = 924 Score = 28.3 bits (60), Expect = 5.2 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +1 Query: 409 YVHYEVDNTDPNANTKTVEALTKSVQNGTSSISKCLNTDGVLTLTP 546 Y HY + DP A T E + SV+ +S+ +N++ V+ L P Sbjct: 239 YGHYRIPLLDPFAIATTTEQSSSSVK--IEELSESVNSNAVVNLRP 282 >At2g32000.1 68415.m03910 DNA topoisomerase family protein similar to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321) {Mus musculus} Length = 865 Score = 28.3 bits (60), Expect = 5.2 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 523 LYSSTSISNLYHFAQTSSAPPLS*CSHLDRCYPLRNERTCSCP 395 L+ ++ N +T + P S C H + +RN+ C+CP Sbjct: 698 LFGASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCACP 740 >At5g39770.1 68418.m04817 repair endonuclease family protein contains Pfam PF02732 : ERCC4 domain; similar to MUS81 endonuclease (GI:16755674) [Mus musculus]; similar to repair endonuclease (TIGR:At5g41150) [Arabidopsis thaliana] Length = 1242 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = -1 Query: 583 CPNI*GRTVSTAEASESKHRLYSSTSISNLYHFAQTSSAPPLS*CSHLDRC 431 CP G + + KH LY + +N+ F + SS P L+ S +C Sbjct: 2 CPKNQGLADYVLQKKQEKHCLYWGCNNNNIRDFGRLSSEPRLNRKSRKTKC 52 >At3g01270.1 68416.m00033 pectate lyase family protein similar to pectate lyase P59 SP:P15722 from [Lycopersicon esculentum] Length = 475 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +1 Query: 103 SSREKAVKRVGEEIMDLLSKPT-AKERSLADKFKSQG 210 + EKAV E++++++S PT + RSL + K +G Sbjct: 74 TEEEKAVASEEEDVIEMISSPTNSTRRSLTGRGKGKG 110 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,735,930 Number of Sequences: 28952 Number of extensions: 335148 Number of successful extensions: 956 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 954 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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