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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0977
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0615 - 22761375-22761760,22762218-22765026                       29   1.3  
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796...    29   1.7  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    29   1.7  
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...    28   2.3  
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    27   4.0  
08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138     27   5.3  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    27   5.3  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    27   7.0  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   7.0  
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509           27   7.0  
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126...    27   7.0  
10_06_0162 - 11348250-11349531,11349571-11349671                       26   9.2  
06_01_0295 - 2154069-2155483,2155561-2155708                           26   9.2  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    26   9.2  

>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 160 PSSDPCRSAGPVVWRGARCAPSHPTSRETSLVLSTSFL 47
           PS DP  +A P  W+G  C+P    SR  SL L  +FL
Sbjct: 49  PSWDPT-AATPCSWQGVTCSPQ---SRVVSLSLPNTFL 82


>03_06_0568 -
           34778408-34778710,34779340-34779411,34779549-34779635,
           34779722-34779880,34780641-34780739,34780823-34780903,
           34781007-34781461,34781550-34781679,34781952-34782743
          Length = 725

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 261 FDDQLDEREI*GYFRRSAIHSRRDHGQGVEQHG 359
           +DD+L   E+  YFRR    S++  G G+ + G
Sbjct: 497 YDDELRREELLNYFRRFQSASQKKGGSGIFRQG 529


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 299 ITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFRPM 144
           I S  S ++   EEDS LA+ A+QG+K E+  S+ E   ++     S F+ +
Sbjct: 846 IQSRSSMIRCSEEEDSRLAEDAMQGMK-EWKSSDSERQGIVLAIEKSIFKDL 896


>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 72  DVSRLV---G*LGAHRAPLQTTGPALRHGSEEGRPVILHQFIPLDLALQKFILQTLEGEL 242
           D+ RLV   G +G  +A L    P +R   + GRP+   QFI +   + + ++ T+   L
Sbjct: 268 DLERLVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQVQHFVNRRLVPTITSYL 327

Query: 243 SQTGIFFD 266
              G   D
Sbjct: 328 LMQGKLAD 335


>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 144 HGSEEGRPVILHQFIPLDLALQKFILQTLEGELSQTGIFFDDQLDEREI*G--YFRRSAI 317
           HGSE  R +  H     D   +KF++   +G+  +  +  DD     E+ G  YF     
Sbjct: 577 HGSEVPRVLRSHDSKSKDENKEKFMVTVFKGDKERAKLRDDDPQKAAELAGPTYFTTHDC 636

Query: 318 HSRRDHGQGV 347
             + +HG+ +
Sbjct: 637 PEKYEHGKAL 646


>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
          Length = 275

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 90  G*LGAHRAPLQTTGPALRHGSEEGRPV-ILHQFIPLDLALQKFILQTLEGE 239
           G   A R    +TGPA R     GRPV +L  F    +A    +LQ L  E
Sbjct: 133 GRAAAQRGRRGSTGPASRRQEGGGRPVALLFMFFSWWVAFAGILLQELAPE 183


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 253 ESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVV 363
           E  + +NL  E  E+I+D  +F  DE+  + +N+ ++
Sbjct: 843 EDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879


>04_04_1574 -
           34536744-34537136,34541247-34541405,34541497-34542411,
           34543642-34543731,34544324-34544390,34544483-34544676,
           34544770-34545510,34545596-34545661,34545783-34545908,
           34545978-34546073,34546153-34546521,34546602-34546724,
           34546802-34546906,34547394-34547531,34547665-34547760,
           34548018-34548275
          Length = 1311

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 58  SIVPMMFRDWWDDWERIERPSRLLDQHFGMG 150
           ++ P  +R W  D+E I R   +L QH GMG
Sbjct: 872 TLTPYRWR-WLRDYEFITRVDAVLRQHSGMG 901


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 121 WRGARCAPSHPTSRETSLVLSTSFL 47
           WRG  C+ S+P SR   L LS+S L
Sbjct: 125 WRGVTCSSSYP-SRVVHLELSSSHL 148


>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
          Length = 332

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 99  GAHRAPLQTTGPALRHGS 152
           GA  APL TTG AL HG+
Sbjct: 44  GAGTAPLSTTGFALAHGA 61


>01_03_0278 -
           14509481-14509506,14510700-14512291,14512547-14512638,
           14513030-14514412
          Length = 1030

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 76  FRDWWDDWERIERPS 120
           F+ WWD  ER E+PS
Sbjct: 652 FKGWWDKTERQEQPS 666


>10_06_0162 - 11348250-11349531,11349571-11349671
          Length = 460

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 175 RITGRPSSDPCRSAGPVVWRGARCAPSHP 89
           R   RP+ DP   A PV+ R A     HP
Sbjct: 27  RFRRRPAVDPAAPAAPVLRRTAELLRGHP 55


>06_01_0295 - 2154069-2155483,2155561-2155708
          Length = 520

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 139 SAGPVVWR-GARCAPSHPTSRETSLVLSTSFLFKVRCERALLXLVC 5
           S GP+ W   +   P    S   S+ ++TSF+F V   +A L ++C
Sbjct: 410 SWGPLGWLVPSEVFPLEVRSAGQSVTVATSFVFTVFVAQAFLAMLC 455


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 163 RPSSDPCRSAGPVVWRGARCAPSHPTSRETSLVLSTSFLFKVRCERALLXL 11
           R  +D CR      W G RC  ++   R  SL L+  FL     + AL  L
Sbjct: 34  RAGTDCCR------WEGVRCGGANGDGRVRSLDLARCFLESAAIDPALFDL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,872
Number of Sequences: 37544
Number of extensions: 175393
Number of successful extensions: 598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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