Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0977
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0615 - 22761375-22761760,22762218-22765026 29 1.3
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796... 29 1.7
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 1.7
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 28 2.3
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 27 4.0
08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138 27 5.3
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 5.3
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 7.0
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 27 7.0
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 27 7.0
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 27 7.0
10_06_0162 - 11348250-11349531,11349571-11349671 26 9.2
06_01_0295 - 2154069-2155483,2155561-2155708 26 9.2
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 26 9.2
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 160 PSSDPCRSAGPVVWRGARCAPSHPTSRETSLVLSTSFL 47
PS DP +A P W+G C+P SR SL L +FL
Sbjct: 49 PSWDPT-AATPCSWQGVTCSPQ---SRVVSLSLPNTFL 82
>03_06_0568 -
34778408-34778710,34779340-34779411,34779549-34779635,
34779722-34779880,34780641-34780739,34780823-34780903,
34781007-34781461,34781550-34781679,34781952-34782743
Length = 725
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 261 FDDQLDEREI*GYFRRSAIHSRRDHGQGVEQHG 359
+DD+L E+ YFRR S++ G G+ + G
Sbjct: 497 YDDELRREELLNYFRRFQSASQKKGGSGIFRQG 529
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 299 ITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFRPM 144
I S S ++ EEDS LA+ A+QG+K E+ S+ E ++ S F+ +
Sbjct: 846 IQSRSSMIRCSEEEDSRLAEDAMQGMK-EWKSSDSERQGIVLAIEKSIFKDL 896
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 72 DVSRLV---G*LGAHRAPLQTTGPALRHGSEEGRPVILHQFIPLDLALQKFILQTLEGEL 242
D+ RLV G +G +A L P +R + GRP+ QFI + + + ++ T+ L
Sbjct: 268 DLERLVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQVQHFVNRRLVPTITSYL 327
Query: 243 SQTGIFFD 266
G D
Sbjct: 328 LMQGKLAD 335
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 144 HGSEEGRPVILHQFIPLDLALQKFILQTLEGELSQTGIFFDDQLDEREI*G--YFRRSAI 317
HGSE R + H D +KF++ +G+ + + DD E+ G YF
Sbjct: 577 HGSEVPRVLRSHDSKSKDENKEKFMVTVFKGDKERAKLRDDDPQKAAELAGPTYFTTHDC 636
Query: 318 HSRRDHGQGV 347
+ +HG+ +
Sbjct: 637 PEKYEHGKAL 646
>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
Length = 275
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 90 G*LGAHRAPLQTTGPALRHGSEEGRPV-ILHQFIPLDLALQKFILQTLEGE 239
G A R +TGPA R GRPV +L F +A +LQ L E
Sbjct: 133 GRAAAQRGRRGSTGPASRRQEGGGRPVALLFMFFSWWVAFAGILLQELAPE 183
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 253 ESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVV 363
E + +NL E E+I+D +F DE+ + +N+ ++
Sbjct: 843 EDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 58 SIVPMMFRDWWDDWERIERPSRLLDQHFGMG 150
++ P +R W D+E I R +L QH GMG
Sbjct: 872 TLTPYRWR-WLRDYEFITRVDAVLRQHSGMG 901
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 121 WRGARCAPSHPTSRETSLVLSTSFL 47
WRG C+ S+P SR L LS+S L
Sbjct: 125 WRGVTCSSSYP-SRVVHLELSSSHL 148
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 99 GAHRAPLQTTGPALRHGS 152
GA APL TTG AL HG+
Sbjct: 44 GAGTAPLSTTGFALAHGA 61
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 76 FRDWWDDWERIERPS 120
F+ WWD ER E+PS
Sbjct: 652 FKGWWDKTERQEQPS 666
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 175 RITGRPSSDPCRSAGPVVWRGARCAPSHP 89
R RP+ DP A PV+ R A HP
Sbjct: 27 RFRRRPAVDPAAPAAPVLRRTAELLRGHP 55
>06_01_0295 - 2154069-2155483,2155561-2155708
Length = 520
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 139 SAGPVVWR-GARCAPSHPTSRETSLVLSTSFLFKVRCERALLXLVC 5
S GP+ W + P S S+ ++TSF+F V +A L ++C
Sbjct: 410 SWGPLGWLVPSEVFPLEVRSAGQSVTVATSFVFTVFVAQAFLAMLC 455
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 163 RPSSDPCRSAGPVVWRGARCAPSHPTSRETSLVLSTSFLFKVRCERALLXL 11
R +D CR W G RC ++ R SL L+ FL + AL L
Sbjct: 34 RAGTDCCR------WEGVRCGGANGDGRVRSLDLARCFLESAAIDPALFDL 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,872
Number of Sequences: 37544
Number of extensions: 175393
Number of successful extensions: 598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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