Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0977
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   34   0.047
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       34   0.047
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 34   0.047
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.083
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 33   0.083
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 33   0.083
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 33   0.083
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 33   0.083
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   33   0.11 
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   27   7.2  
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  26   9.5  

>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKH 378
           + K E+  LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 5   ENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH 38



 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 283 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +KF + +DV+ F P+ I V+   N ++V   HE
Sbjct: 97  DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHE 129


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 241 LARQESSSTINLTKEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKH 378
           L  + S   + L  ++ E+  LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 225 LDEEVSCRLVYLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH 271



 Score = 33.1 bits (72), Expect = 0.083
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKH 378
           + K E+  LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 283 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +KF + +DV  F PD I V+   N ++V   HE
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHE 129



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 283 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +KF + +DV  F PD I V+   N ++V   HE
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHE 363


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = +1

Query: 283 EKFEVI-LDVQQFTPDEITVKASNNTVVVEG--KHEEK 387
           +KF++  LDV++F P+EIT K  N  + V G  +HE +
Sbjct: 4   DKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESE 41



 Score = 29.9 bits (64), Expect = 0.77
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 244 ARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           A  E+ +       KF + LDV  F P+E+ VK   + + V  + E
Sbjct: 85  ATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE 130


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKH 378
           + K E+  LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 283 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +KF + +DV  F PD I V+   N ++V   HE
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHE 129


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 232 RASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +A  A +E+ S       KF + LDV  F P+E+ VK   + + V  + E
Sbjct: 9   KAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE 58


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 301 LDVQQFTPDEITVKASNNTVVVEGKH 378
           LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRH 37



 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 280 KEKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           ++KF + +DV  F P+ I V+   N ++V   HE
Sbjct: 95  EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHE 128


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKH 378
           + K E+  LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 283 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +KF + +DV  F PD I V+   N ++V   HE
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHE 129


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKH 378
           + K E+  LDV+++ P+EI+ K  N  V V+G+H
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 283 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHE 381
           +KF + +DV  F PD I V+   N ++V   HE
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHE 129


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +1

Query: 283 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEK 387
           +K E+  LDV+ + P+EI++K  +  + ++GKH+ +
Sbjct: 38  DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSE 73


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 238 SLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTV 360
           S A+Q +S   +LT  K EV + V Q TP E   K SNN +
Sbjct: 396 SNAQQATSKEQHLTS-KGEVQVPVGQITPSEQASKTSNNAL 435


>SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 245 AKLALQGLKYEFLKSEVEGNELMEDNRSSF 156
           AK +L  + YE+  S  E  E + +NR +F
Sbjct: 26  AKDSLSKIAYEYFSSGAENEETLRENREAF 55


>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 205 FRNSYFRPW--RASLARQESSSTINLTKEKFEVIL 303
           FR  YFR W  R S+ R  SSS+ N++KE F+V++
Sbjct: 75  FRRRYFRHWSIRKSM-RCFSSSSRNVSKE-FDVVI 107


>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 313

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 179 MEDNRSSFFRPMPKCWSSSL 120
           M+D R +FFR + KCW  S+
Sbjct: 224 MKDFRQTFFRWLIKCWRRSV 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,435,917
Number of Sequences: 59808
Number of extensions: 180259
Number of successful extensions: 472
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)