Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0977
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta...    29   1.1  
At5g46850.1 68418.m05773 expressed protein  ; expression support...    29   1.5  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   3.4  
At5g04750.1 68418.m00488 F1F0-ATPase inhibitor protein, putative...    27   5.9  
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    26   7.8  
At3g14415.1 68416.m01824 (S)-2-hydroxy-acid oxidase, peroxisomal...    26   7.8  

>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
           domain-containing protein contains similarity to S-locus
           protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 695

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 261 FDDQLDEREI*GYFRRSAIHSRRD-HGQGVEQHGCRRRQARGE 386
           +DD+L   E+  YFRR    S++D  G G    G    +  GE
Sbjct: 471 YDDELKREELLNYFRRFQNSSQKDTRGHGFSGSGFGSSEGEGE 513


>At5g46850.1 68418.m05773 expressed protein  ; expression supported
           by MPSS
          Length = 296

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 99  GAHRAPLQTTGPALRHGSEEGRPVILHQFIPLDLALQKFILQTLEGE--LSQTGIFFDDQ 272
           G+HR  + +    L H   + R +++ + +PL +    F LQ+L+     S   +F D  
Sbjct: 99  GSHRNLITSIKLLLHHSESQFRELVIVERLPLGVFADPFELQSLQQRRAFSDVSVFGDTN 158

Query: 273 LD 278
           L+
Sbjct: 159 LE 160


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 150 SEEGRPVILHQFIPLDLALQKFILQTLEGELSQTGIFFDD 269
           S   R  +L  F+PL LA   F+LQ   G       +FDD
Sbjct: 580 SSYSRKFLLITFLPLSLACLAFLLQWRSGVNDSVTQWFDD 619


>At5g04750.1 68418.m00488 F1F0-ATPase inhibitor protein, putative
           similar to F1F0-ATPase inhibitor protein [Oryza sativa
           (japonica cultivar-group)] gi|5106371|dbj|BAA81661
          Length = 94

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 96  LGAHRAPLQTTGPALRHGSEE-GRPVILHQFIPLDLALQKFILQTLE 233
           +GA R+ + T GPA+R+ S++ GR +   +     + +QK   + LE
Sbjct: 22  IGASRSVVSTRGPAIRYFSDDKGRVLSEEERAKESMYIQKMERERLE 68


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 308 TSKITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNE 183
           TS++   F   KLI    SC + +++Q ++   +   +E N+
Sbjct: 131 TSRLAKKFKIPKLIFHGFSCFSLMSIQVVRESGILKMIESND 172


>At3g14415.1 68416.m01824 (S)-2-hydroxy-acid oxidase, peroxisomal,
           putative / glycolate oxidase, putative / short chain
           alpha-hydroxy acid oxidase, putative similar to
           (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
           oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
           [Spinacia oleracea] SWISS-PROT:P05414
          Length = 367

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 266 VEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFR 150
           V E   +AK  L  + Y++  S  E    +++NR++F R
Sbjct: 6   VTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFAR 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,670
Number of Sequences: 28952
Number of extensions: 130270
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)