Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55DD1 Cluster: PREDICTED: similar to CG4393-PA;...   107   4e-22
UniRef50_UPI00015B6225 Cluster: PREDICTED: similar to IP14385p; ...    48   2e-04
UniRef50_Q9VCM6 Cluster: CG4393-PA; n=3; Sophophora|Rep: CG4393-...    37   0.59 
UniRef50_A4FWZ8 Cluster: Putative uncharacterized protein; n=4; ...    33   7.3  

>UniRef50_UPI0000D55DD1 Cluster: PREDICTED: similar to CG4393-PA; n=2;
            Coelomata|Rep: PREDICTED: similar to CG4393-PA -
            Tribolium castaneum
          Length = 1300

 Score =  107 bits (256), Expect = 4e-22
 Identities = 76/189 (40%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
 Frame = +3

Query: 165  GLFKGSTTTLDGIGLRPMPAERPKTLRKLKSVYDASPTEPPVIHTATLTSNGQAHERNIN 344
            GL KGST  L+ I     PAERPKTL+KLK VYD S T+         +S+ + +E   N
Sbjct: 782  GLIKGSTRVLENISSNT-PAERPKTLKKLKRVYDGSSTDAAKSDNEKSSSSEKEYENKEN 840

Query: 345  GVEDEVXXXXXXXXXXHSGDKSLSILSPFDEQEEWAKISEIMASFGSKLVRESVFVSELE 524
              +D V                 S LSPFDEQEEWAKI EIMASFG+ +VRESVFV+ELE
Sbjct: 841  --KDRV-----------------SALSPFDEQEEWAKIQEIMASFGTGIVRESVFVAELE 881

Query: 525  QEF--TXXXXXXXXXXXXXXXXXXXXRTLVVWDWGCTTTRHCFLGSGYDDIDF-INGILD 695
            +EF                       +TL + D+        F+ +G+DD++F ++ +++
Sbjct: 882  KEFQSRLMTLSCSQNSLNADSIEKWLQTLGMQDY-----VGLFMSNGFDDVNFLVSKVIE 936

Query: 696  ENDLREMGI 722
            + DL EMGI
Sbjct: 937  DCDLSEMGI 945


>UniRef50_UPI00015B6225 Cluster: PREDICTED: similar to IP14385p;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           IP14385p - Nasonia vitripennis
          Length = 1357

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
 Frame = +3

Query: 222 AERPKTLRKLKSVYDASP----TEPPVIHTATLTSNGQAHERNINGVEDEVXXXXXXXXX 389
           AERP+TLR+L++VY  +     T   V     L  + Q+H  +    +            
Sbjct: 690 AERPRTLRRLRNVYSPATGGMGTGADVAGEQRLEHHHQSHHHHQQQQQQHQQESRSSGDE 749

Query: 390 XHSG----DKSLSILSPFDEQEEWAK 455
             SG    DK+LSI+SPFDEQEEW +
Sbjct: 750 LGSGNQRDDKTLSIMSPFDEQEEWGQ 775



 Score = 37.9 bits (84), Expect = 0.26
 Identities = 15/27 (55%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
 Frame = +3

Query: 645 FLGSGYDDIDFI-NGILDENDLREMGI 722
           FL  G+DD++FI +G+LD++DL++MGI
Sbjct: 811 FLNYGFDDLEFIVSGVLDDSDLKDMGI 837


>UniRef50_Q9VCM6 Cluster: CG4393-PA; n=3; Sophophora|Rep: CG4393-PA -
            Drosophila melanogaster (Fruit fly)
          Length = 1348

 Score = 36.7 bits (81), Expect = 0.59
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
 Frame = +3

Query: 393  HSGDK-SLSILSPFDEQEEWAKISEIMASFGSKLVRESVF-VSELEQEFTXXXXXXXXXX 566
            HS  + S+++LSPF+ +E   KISEI+ +FGS ++  S+    ++E +F           
Sbjct: 871  HSAARNSINLLSPFNAEEARKKISEIIENFGSGILNTSITPTHDIELDFEDMEVPNERRE 930

Query: 567  XXXXXXXXXXRTLVVWDWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
                              G          +GYD+  F+N + +E D+  + I  R
Sbjct: 931  LATRLRAA----------GLLHLERILFENGYDNYKFVNNVFEEPDIPLLHIPER 975


>UniRef50_A4FWZ8 Cluster: Putative uncharacterized protein; n=4;
           Methanococcus|Rep: Putative uncharacterized protein -
           Methanococcus maripaludis
          Length = 361

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +3

Query: 309 TSNGQAHERNINGVEDEVXXXXXXXXXXHSGDKSLSILSPFDEQEEWAKISEIMASFGSK 488
           + NG+ H  N  G ++ +          HS  KS SI + F+  + W K+SEIM    S+
Sbjct: 86  SKNGETHYINTTGSDNYLKTDSI-----HS--KSPSISASFNSMDRWTKLSEIMNGSKSE 138

Query: 489 LVRESVFVSEL 521
            + E+VF  E+
Sbjct: 139 -ITETVFFPEI 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,000,347
Number of Sequences: 1657284
Number of extensions: 12641476
Number of successful extensions: 40520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40467
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)