Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    28   1.6  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    27   2.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   4.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   6.4  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   6.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.5  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 528 LARVRTQRPTPAPVCCQTTPLSRISSPIPPV 436
           LAR +  +P P  +  QT+PL    SPIPPV
Sbjct: 416 LARPKAIKPMPTSIHGQTSPL----SPIPPV 442


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 577 HLWPLVLGLWLSGIG 621
           H WP++LG W S +G
Sbjct: 107 HKWPIILGTWASTMG 121


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 536 CKFLLEFGHKDRLPHQ 489
           CKFL E  H D  PHQ
Sbjct: 448 CKFLCELDHFDSFPHQ 463


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 126 ASSIYFSSWILLIGLFKGSTTTLDGIG 206
           +S++ FSSW+LLI L+   T  L  +G
Sbjct: 428 SSTVPFSSWLLLIFLYLLFTVPLSFVG 454


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 228 RPKTLRKLKSVYDASPTEPPVIHTATLTSNGQAHERNINGVEDE 359
           RP   ++L+S++   PTEPP   T  L S     E N+    +E
Sbjct: 215 RPVQTKELESLFAELPTEPPK-QTRFLKSQQPTSEPNVETQVEE 257


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 240 LRKLKSVYDASPTEPPVIHTATLTSNGQAHERNINGVEDEVXXXXXXXXXXHS-GDKSLS 416
           +R + S  D   T+  V H  T     + HE N+N V++E            S  D    
Sbjct: 50  IRLITSKCDFESTQQLVHHNCT---GHKVHEHNLNAVDEEDFDTENLPLLFSSFSDNESD 106

Query: 417 ILSPFDEQEEWAKISEIMASFGSKL 491
           IL P D     A+ ++++ S  SK+
Sbjct: 107 ILEP-DLNTRVAEDNDVLLSRYSKI 130


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 216 MPAERPKTLRKLKSVYDASPTEPPVIHTATLTSNGQAHERNINGVEDE 359
           + A++ + L K+KS    SP +   +  + L +   A+E  +NG+ED+
Sbjct: 455 LEAQKCEYLIKMKSPAACSPDQ---LKQSLLNTQNSANENAVNGMEDK 499


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 513 TQRPTPAPVCCQTTPLSRISSPIPPVRQKD 424
           T +  PAP     TPL+ IS P+    QKD
Sbjct: 166 TAKVAPAPAPSTKTPLANISKPVVQA-QKD 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,033
Number of Sequences: 5004
Number of extensions: 47412
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)