Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824     30   1.7  
05_07_0140 - 27982037-27983794                                         29   3.8  
07_03_1491 + 26953193-26954326                                         29   5.1  
08_01_0276 - 2259860-2260135                                           28   6.7  
08_02_0537 - 18313265-18313291,18313352-18315460                       28   8.8  

>03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824
          Length = 206

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 522 RVRTQRPTPAPVCCQTTPLSRISSPIPPVRQKD*VWTAIYPRYALSWW 379
           ++R  R        +T   +  S+P+     K   WTA YP+Y   WW
Sbjct: 146 KLRLDRVLAEQFEAETLEEALASNPVDLKFDKPEKWTAPYPKYEYGWW 193


>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 327 GPVHCWSGSPCG*PAALSAKRRKLISVFATFSASRLASAED 205
           G +  W+ +P G PAAL+A  R  +  F +   S  A+AED
Sbjct: 48  GRIADWTRNPAG-PAALAAASRDSVFDFTSVDDSLAAAAED 87


>07_03_1491 + 26953193-26954326
          Length = 377

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 584 HRWTQAGLGAAEAESGCKFL 525
           HRW Q GLG   AE  C+ L
Sbjct: 311 HRWNQHGLGGDNAEGKCRSL 330


>08_01_0276 - 2259860-2260135
          Length = 91

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 510 QRPTPAPVCCQTTPLSRISSPIPPVRQKD*VWTAIYPRYALSWWC 376
           Q P P  VC   TP + +++    V      WTA        WWC
Sbjct: 32  QTPYPILVCAFITPTALLAAADDVVLAAVLAWTANVSAATSLWWC 76


>08_02_0537 - 18313265-18313291,18313352-18315460
          Length = 711

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 641 MSRSRASPIPDNQSPRTRGHRWTQAGLGAAEAESGCKFLLEFGHKDRLP 495
           ++ +R S +  ++SPR+ GH +    L  A+++     ++ F HK + P
Sbjct: 55  ITTTRMSNVASSRSPRSNGHIYEMESLNDADSKELFSKII-FDHKGKCP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,014,507
Number of Sequences: 37544
Number of extensions: 373124
Number of successful extensions: 1179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)