Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 31   0.97 
SB_483| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                   31   0.97 
SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 31   0.97 
SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)                 31   0.97 
SB_6859| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   29   3.9  
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)           29   3.9  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    28   6.8  
SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_24153| Best HMM Match : I_LWEQ (HMM E-Value=0.44)                   28   9.0  

>SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 645 FLGSGYDDIDFINGILDENDLREMGI 722
           F+GSGY DID I   L+++DL +MGI
Sbjct: 375 FVGSGYVDIDHIRN-LEDDDLLKMGI 399


>SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 155

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
           D G +  +  F+  GYDD+D +  I D+ +L E+GI  R
Sbjct: 15  DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52


>SB_483| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 273

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
           D G +  +  F+  GYDD+D +  I D+ +L E+GI  R
Sbjct: 15  DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52


>SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
           D G +  +  F+  GYDD+D +  I D+ +L E+GI  R
Sbjct: 15  DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52


>SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)
          Length = 226

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
           D G +  +  F+  GYDD+D +  I D+ +L E+GI  R
Sbjct: 15  DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52


>SB_6859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 533 KFLLEFGHKDRLPHQFAAKRRHY 465
           K+LLE GH+D+ P+    K  HY
Sbjct: 18  KYLLEAGHEDQAPNSIIRKTMHY 40


>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 537

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 204 GLRPMPAERPKTLRK-LKSVYDASPTEPP--VIHTATLTSNGQAHERNING 347
           G++P PA+RP+T+ K L    D+S    P     T  +  + Q   R ING
Sbjct: 298 GVKPDPAKRPQTVGKHLPEAPDSSTATSPKNATKTPAVRHHHQIRPRQING 348


>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 437 TGGMGEDIRDNGVVWQQTGAGVGLC 511
           + GM      +G  WQ TG GVG+C
Sbjct: 132 SNGMTRQACPSGTQWQTTGPGVGIC 156


>SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)
          Length = 308

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +3

Query: 645 FLGSGYDDIDFINGILDENDLREMGI 722
           F+GSGY DID I   L+++DL ++GI
Sbjct: 257 FVGSGYVDIDHIRH-LEDDDLLKIGI 281


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 402  DKSLSILSPFDEQEEWAKISEIMASF 479
            +K L    P DE+EE+AK  E MA F
Sbjct: 997  EKQLEEDEPIDEEEEFAKAMEAMACF 1022



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 402  DKSLSILSPFDEQEEWAKISEIMASF 479
            +K L    P DE+EE+AK  E MA F
Sbjct: 1206 EKQLEEDEPIDEEEEFAKTMEAMACF 1231


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 516 RTQRPTPAPVCCQTTPLSRISSPIPPVRQK 427
           R +RP P P       +SR S P PPV QK
Sbjct: 68  RNRRPPPPPPTEAEESISRGSLPAPPVPQK 97


>SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 405 KSLSILSPFDEQEEWAKISEIMASFGSKLV 494
           KS   L P    E W +IS I+A FG+ ++
Sbjct: 53  KSWLFLPPVMSAESWTRISTIVARFGAVII 82


>SB_24153| Best HMM Match : I_LWEQ (HMM E-Value=0.44)
          Length = 563

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 171 FKGSTTTLDGIGLRPMPAERPKTLRKLKSVYDASPTEPPVIHTATL-TSNGQAHERNING 347
           +KG T T    G     A   +   K K+V       PPV+H  T+ T++G+      +G
Sbjct: 168 YKGKTVTSTAHGKPASTARGNRQKYKRKTVTILHTENPPVLHAVTVRTTSGKTVTSTAHG 227

Query: 348 V 350
           +
Sbjct: 228 I 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,929,670
Number of Sequences: 59808
Number of extensions: 385552
Number of successful extensions: 1211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)