BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0975 (735 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73 SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) 31 0.97 SB_483| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) 31 0.97 SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) 31 0.97 SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14) 31 0.97 SB_6859| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 3.9 SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33) 29 3.9 SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8 SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 28 6.8 SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0 SB_24153| Best HMM Match : I_LWEQ (HMM E-Value=0.44) 28 9.0 >SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 426 Score = 31.5 bits (68), Expect = 0.73 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 Query: 645 FLGSGYDDIDFINGILDENDLREMGI 722 F+GSGY DID I L+++DL +MGI Sbjct: 375 FVGSGYVDIDHIRN-LEDDDLLKMGI 399 >SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) Length = 155 Score = 31.1 bits (67), Expect = 0.97 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731 D G + + F+ GYDD+D + I D+ +L E+GI R Sbjct: 15 DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52 >SB_483| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) Length = 273 Score = 31.1 bits (67), Expect = 0.97 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731 D G + + F+ GYDD+D + I D+ +L E+GI R Sbjct: 15 DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52 >SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) Length = 255 Score = 31.1 bits (67), Expect = 0.97 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731 D G + + F+ GYDD+D + I D+ +L E+GI R Sbjct: 15 DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52 >SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14) Length = 226 Score = 31.1 bits (67), Expect = 0.97 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 615 DWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731 D G + + F+ GYDD+D + I D+ +L E+GI R Sbjct: 15 DCGLSEFQSLFVDEGYDDLDVVATITDQ-ELEEIGILKR 52 >SB_6859| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 58 Score = 29.9 bits (64), Expect = 2.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 533 KFLLEFGHKDRLPHQFAAKRRHY 465 K+LLE GH+D+ P+ K HY Sbjct: 18 KYLLEAGHEDQAPNSIIRKTMHY 40 >SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) Length = 537 Score = 29.1 bits (62), Expect = 3.9 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +3 Query: 204 GLRPMPAERPKTLRK-LKSVYDASPTEPP--VIHTATLTSNGQAHERNING 347 G++P PA+RP+T+ K L D+S P T + + Q R ING Sbjct: 298 GVKPDPAKRPQTVGKHLPEAPDSSTATSPKNATKTPAVRHHHQIRPRQING 348 >SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 225 Score = 29.1 bits (62), Expect = 3.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 437 TGGMGEDIRDNGVVWQQTGAGVGLC 511 + GM +G WQ TG GVG+C Sbjct: 132 SNGMTRQACPSGTQWQTTGPGVGIC 156 >SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33) Length = 308 Score = 29.1 bits (62), Expect = 3.9 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +3 Query: 645 FLGSGYDDIDFINGILDENDLREMGI 722 F+GSGY DID I L+++DL ++GI Sbjct: 257 FVGSGYVDIDHIRH-LEDDDLLKIGI 281 >SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1275 Score = 28.3 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 402 DKSLSILSPFDEQEEWAKISEIMASF 479 +K L P DE+EE+AK E MA F Sbjct: 997 EKQLEEDEPIDEEEEFAKAMEAMACF 1022 Score = 28.3 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 402 DKSLSILSPFDEQEEWAKISEIMASF 479 +K L P DE+EE+AK E MA F Sbjct: 1206 EKQLEEDEPIDEEEEFAKTMEAMACF 1231 >SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) Length = 1860 Score = 28.3 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 Query: 516 RTQRPTPAPVCCQTTPLSRISSPIPPVRQK 427 R +RP P P +SR S P PPV QK Sbjct: 68 RNRRPPPPPPTEAEESISRGSLPAPPVPQK 97 >SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 163 Score = 27.9 bits (59), Expect = 9.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 405 KSLSILSPFDEQEEWAKISEIMASFGSKLV 494 KS L P E W +IS I+A FG+ ++ Sbjct: 53 KSWLFLPPVMSAESWTRISTIVARFGAVII 82 >SB_24153| Best HMM Match : I_LWEQ (HMM E-Value=0.44) Length = 563 Score = 27.9 bits (59), Expect = 9.0 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +3 Query: 171 FKGSTTTLDGIGLRPMPAERPKTLRKLKSVYDASPTEPPVIHTATL-TSNGQAHERNING 347 +KG T T G A + K K+V PPV+H T+ T++G+ +G Sbjct: 168 YKGKTVTSTAHGKPASTARGNRQKYKRKTVTILHTENPPVLHAVTVRTTSGKTVTSTAHG 227 Query: 348 V 350 + Sbjct: 228 I 228 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,929,670 Number of Sequences: 59808 Number of extensions: 385552 Number of successful extensions: 1211 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1210 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1974037988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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