Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025846-1|ABF85746.1| 1325|Drosophila melanogaster IP14385p pro...    37   0.033
AE014297-3323|AAF56132.3| 1348|Drosophila melanogaster CG4393-PA...    37   0.033
AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p pro...    30   2.8  
AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA...    30   2.8  
AY553965-1|AAS90559.1|  748|Drosophila melanogaster thisbe protein.    29   5.0  
AE013599-1345|AAF58621.2|  748|Drosophila melanogaster CG12443-P...    29   5.0  
AY102684-1|AAM27513.1|  872|Drosophila melanogaster LD24134p pro...    29   8.7  
AE014297-1234|AAF54579.2|  872|Drosophila melanogaster CG6621-PA...    29   8.7  

>BT025846-1|ABF85746.1| 1325|Drosophila melanogaster IP14385p protein.
          Length = 1325

 Score = 36.7 bits (81), Expect = 0.033
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
 Frame = +3

Query: 393  HSGDK-SLSILSPFDEQEEWAKISEIMASFGSKLVRESVF-VSELEQEFTXXXXXXXXXX 566
            HS  + S+++LSPF+ +E   KISEI+ +FGS ++  S+    ++E +F           
Sbjct: 871  HSAARNSINLLSPFNAEEARKKISEIIENFGSGILNTSITPTHDIELDFEDMEVPNERRE 930

Query: 567  XXXXXXXXXXRTLVVWDWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
                              G          +GYD+  F+N + +E D+  + I  R
Sbjct: 931  LATRLRAA----------GLLHLERILFENGYDNYKFVNNVFEEPDIPLLHIPER 975


>AE014297-3323|AAF56132.3| 1348|Drosophila melanogaster CG4393-PA
            protein.
          Length = 1348

 Score = 36.7 bits (81), Expect = 0.033
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
 Frame = +3

Query: 393  HSGDK-SLSILSPFDEQEEWAKISEIMASFGSKLVRESVF-VSELEQEFTXXXXXXXXXX 566
            HS  + S+++LSPF+ +E   KISEI+ +FGS ++  S+    ++E +F           
Sbjct: 871  HSAARNSINLLSPFNAEEARKKISEIIENFGSGILNTSITPTHDIELDFEDMEVPNERRE 930

Query: 567  XXXXXXXXXXRTLVVWDWGCTTTRHCFLGSGYDDIDFINGILDENDLREMGIRTR 731
                              G          +GYD+  F+N + +E D+  + I  R
Sbjct: 931  LATRLRAA----------GLLHLERILFENGYDNYKFVNNVFEEPDIPLLHIPER 975


>AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p
           protein.
          Length = 683

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 189 TLDGIGLRPMPAERPKTLRKLKS--VYDASPTEPPVIHTATLTS 314
           T  GI   PMPA   K  +  K   VYD +P  PP +  +T TS
Sbjct: 216 TKPGIVNLPMPARPSKPSKPTKKPIVYDRTPPPPPSVPPSTSTS 259


>AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA
           protein.
          Length = 787

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 189 TLDGIGLRPMPAERPKTLRKLKS--VYDASPTEPPVIHTATLTS 314
           T  GI   PMPA   K  +  K   VYD +P  PP +  +T TS
Sbjct: 320 TKPGIVNLPMPARPSKPSKPTKKPIVYDRTPPPPPSVPPSTSTS 363


>AY553965-1|AAS90559.1|  748|Drosophila melanogaster thisbe protein.
          Length = 748

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 290 HPHGDPDQQWTGPRKEHQRCRRRSQKKEQHHQ 385
           H H DP       + E ++ RR+ QK++QH Q
Sbjct: 252 HHHNDPSLLLRRQQHEKKQKRRKQQKQQQHQQ 283


>AE013599-1345|AAF58621.2|  748|Drosophila melanogaster CG12443-PA
           protein.
          Length = 748

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 290 HPHGDPDQQWTGPRKEHQRCRRRSQKKEQHHQ 385
           H H DP       + E ++ RR+ QK++QH Q
Sbjct: 252 HHHNDPSLLLRRQQHEKKQKRRKQQKQQQHQQ 283


>AY102684-1|AAM27513.1|  872|Drosophila melanogaster LD24134p
           protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 650 QETMSRSRASPIPDNQSPRTRGHRWTQAGLGAAEAESGCKFLLEFGHKDRLPH-QFAAKR 474
           ++T   SR S   DN  P T  H  +  G G A+     KFL +  H +  P   F  K+
Sbjct: 597 KKTAVSSRKSSF-DNVGPSTSRHAASVVGFGGAQPPPAPKFLGQKKHPEPAPKLSFQIKK 655

Query: 473 R 471
           R
Sbjct: 656 R 656


>AE014297-1234|AAF54579.2|  872|Drosophila melanogaster CG6621-PA
           protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 650 QETMSRSRASPIPDNQSPRTRGHRWTQAGLGAAEAESGCKFLLEFGHKDRLPH-QFAAKR 474
           ++T   SR S   DN  P T  H  +  G G A+     KFL +  H +  P   F  K+
Sbjct: 597 KKTAVSSRKSSF-DNVGPSTSRHAASVVGFGGAQPPPAPKFLGQKKHPEPAPKLSFQIKK 655

Query: 473 R 471
           R
Sbjct: 656 R 656


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,472,762
Number of Sequences: 53049
Number of extensions: 607005
Number of successful extensions: 2669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)