Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81072-11|CAB03021.2|  205|Caenorhabditis elegans Hypothetical p...    28   6.0  

>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 435 EQEEWAKISEIMASFGSKLVRESVFVSELE 524
           E+  W ++  +  SFG+   RESVFV E E
Sbjct: 768 EEPSWDRVESVFDSFGAAPCRESVFVREYE 797


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 650 QETMSRSRASP--IPDNQSPRTRGHRW-TQAGLGAAEAE 543
           +E       SP  IPD QS +  GH+W   AG G+A A+
Sbjct: 124 KEVFKSKGVSPVIIPDEQSGKYAGHQWLAYAGNGSASAD 162


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 650 QETMSRSRASP--IPDNQSPRTRGHRW-TQAGLGAAEAE 543
           +E       SP  IPD QS +  GH+W   AG G+A A+
Sbjct: 124 KEVFKSKGVSPVIIPDEQSGKYAGHQWLAYAGNGSASAD 162


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 650 QETMSRSRASP--IPDNQSPRTRGHRW-TQAGLGAAEAE 543
           +E       SP  IPD QS +  GH+W   AG G+A A+
Sbjct: 143 KEVFKSKGVSPVIIPDEQSGKYAGHQWLAYAGNGSASAD 181


>Z81072-11|CAB03021.2|  205|Caenorhabditis elegans Hypothetical
           protein F30A10.2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 171 FKGSTTTLDGIGLRPMP--AERPKTLRKLKSVYDASPTEPPVIHTATLTSNGQAHERNIN 344
           F+  TT    + ++ +P   + P +  K  SV + SPT  P+I T+T T+     E+ +N
Sbjct: 33  FQQETTAEVEVSVQNIPRHGKSPSSFEKYNSVEERSPTRLPMITTST-TAPKILIEKKVN 91

Query: 345 GVEDE 359
             + E
Sbjct: 92  QQKQE 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,511,266
Number of Sequences: 27780
Number of extensions: 282734
Number of successful extensions: 887
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)