BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0975 (735 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 32 0.48 U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 29 3.4 U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 29 3.4 U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 29 3.4 Z81072-11|CAB03021.2| 205|Caenorhabditis elegans Hypothetical p... 28 6.0 >Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical protein C11E4.6 protein. Length = 1170 Score = 31.9 bits (69), Expect = 0.48 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 435 EQEEWAKISEIMASFGSKLVRESVFVSELE 524 E+ W ++ + SFG+ RESVFV E E Sbjct: 768 EEPSWDRVESVFDSFGAAPCRESVFVREYE 797 >U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical protein R57.1b protein. Length = 576 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 650 QETMSRSRASP--IPDNQSPRTRGHRW-TQAGLGAAEAE 543 +E SP IPD QS + GH+W AG G+A A+ Sbjct: 124 KEVFKSKGVSPVIIPDEQSGKYAGHQWLAYAGNGSASAD 162 >U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical protein R57.1c protein. Length = 751 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 650 QETMSRSRASP--IPDNQSPRTRGHRW-TQAGLGAAEAE 543 +E SP IPD QS + GH+W AG G+A A+ Sbjct: 124 KEVFKSKGVSPVIIPDEQSGKYAGHQWLAYAGNGSASAD 162 >U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical protein R57.1a protein. Length = 770 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 650 QETMSRSRASP--IPDNQSPRTRGHRW-TQAGLGAAEAE 543 +E SP IPD QS + GH+W AG G+A A+ Sbjct: 143 KEVFKSKGVSPVIIPDEQSGKYAGHQWLAYAGNGSASAD 181 >Z81072-11|CAB03021.2| 205|Caenorhabditis elegans Hypothetical protein F30A10.2 protein. Length = 205 Score = 28.3 bits (60), Expect = 6.0 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3 Query: 171 FKGSTTTLDGIGLRPMP--AERPKTLRKLKSVYDASPTEPPVIHTATLTSNGQAHERNIN 344 F+ TT + ++ +P + P + K SV + SPT P+I T+T T+ E+ +N Sbjct: 33 FQQETTAEVEVSVQNIPRHGKSPSSFEKYNSVEERSPTRLPMITTST-TAPKILIEKKVN 91 Query: 345 GVEDE 359 + E Sbjct: 92 QQKQE 96 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,511,266 Number of Sequences: 27780 Number of extensions: 282734 Number of successful extensions: 887 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 825 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 887 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1724918872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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