Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 498 PAPVCCQTTPLSRISSP 448
           P P+ C TTP S I +P
Sbjct: 655 PRPISCHTTPDSFIEAP 671


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 231 PKTLRKLKSVYDASPTEPPVIHTATLTS 314
           P TLRK+      +P  P  +    LTS
Sbjct: 899 PDTLRKIAQNRGTNPLAPDAVDLTQLTS 926


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 157 RIHEEK*IDDAIKSTLTNGYSLNHN--KKL 74
           R   EK  +  I S+L+N Y+ N+N  KKL
Sbjct: 70  RKEREKSKEHKIISSLSNNYNYNNNNYKKL 99


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 157 RIHEEK*IDDAIKSTLTNGYSLNHN--KKL 74
           R   EK  +  I S+L+N Y+ N+N  KKL
Sbjct: 70  RKEREKSKEHKIISSLSNNYNYNNNNYKKL 99


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 157 RIHEEK*IDDAIKSTLTNGYSLNHN--KKL 74
           R   EK  +  I S+L+N Y+ N+N  KKL
Sbjct: 70  RKEREKSKEHKIISSLSNNYNYNNNNYKKL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,408
Number of Sequences: 438
Number of extensions: 3527
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)