BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0975 (735 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g56660.1 68416.m06301 bZIP transcription factor family protei... 31 0.60 At4g01530.1 68417.m00198 hypothetical protein 31 1.0 At5g48310.1 68418.m05968 expressed protein 28 5.6 At1g50400.1 68414.m05649 porin family protein low similarity to ... 28 7.4 >At3g56660.1 68416.m06301 bZIP transcription factor family protein similar to AtbZIP transcription factor GI:17065880 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor Length = 620 Score = 31.5 bits (68), Expect = 0.60 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%) Frame = -2 Query: 659 ATTQETMSRSRASPIPDNQSPRTRG---HRWTQAGLGAAEAES 540 ATT +T+S A P+PD+ SPRTR H +++ G G + + S Sbjct: 413 ATTTKTLSP--ALPLPDSTSPRTRDVSKHLYSETGKGLSSSGS 453 >At4g01530.1 68417.m00198 hypothetical protein Length = 239 Score = 30.7 bits (66), Expect = 1.0 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = -1 Query: 477 TTPLSRISSPIPPVR-QKD*VWTAIYPRYALSWWC 376 TT + SP VR Q D W ++ P L WWC Sbjct: 188 TTITGSLDSPTQSVRCQFDGSWKSLDPNMGLGWWC 222 >At5g48310.1 68418.m05968 expressed protein Length = 1156 Score = 28.3 bits (60), Expect = 5.6 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +3 Query: 213 PMPAERPKTLRKLKSVY-----DASPTEPPVIHTATLTSNGQAHERNINGVEDEV 362 P RP TL SVY +P+ PP++ + S E++I +EDE+ Sbjct: 138 PASERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEKDIQKIEDEI 192 >At1g50400.1 68414.m05649 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin Length = 310 Score = 27.9 bits (59), Expect = 7.4 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -3 Query: 127 AIKSTLTNGYSLNHNKKLNEQKFLN*TI 44 A+K L G+ L++NK LN++ FL+ +I Sbjct: 44 ALKPELFEGFRLDYNKSLNQKFFLSHSI 71 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,944,389 Number of Sequences: 28952 Number of extensions: 276207 Number of successful extensions: 844 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 844 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1614253080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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