Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0975
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56660.1 68416.m06301 bZIP transcription factor family protei...    31   0.60 
At4g01530.1 68417.m00198 hypothetical protein                          31   1.0  
At5g48310.1 68418.m05968 expressed protein                             28   5.6  
At1g50400.1 68414.m05649 porin family protein low similarity to ...    28   7.4  

>At3g56660.1 68416.m06301 bZIP transcription factor family protein
           similar to AtbZIP transcription factor GI:17065880 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 620

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -2

Query: 659 ATTQETMSRSRASPIPDNQSPRTRG---HRWTQAGLGAAEAES 540
           ATT +T+S   A P+PD+ SPRTR    H +++ G G + + S
Sbjct: 413 ATTTKTLSP--ALPLPDSTSPRTRDVSKHLYSETGKGLSSSGS 453


>At4g01530.1 68417.m00198 hypothetical protein 
          Length = 239

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 477 TTPLSRISSPIPPVR-QKD*VWTAIYPRYALSWWC 376
           TT    + SP   VR Q D  W ++ P   L WWC
Sbjct: 188 TTITGSLDSPTQSVRCQFDGSWKSLDPNMGLGWWC 222


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 213 PMPAERPKTLRKLKSVY-----DASPTEPPVIHTATLTSNGQAHERNINGVEDEV 362
           P    RP TL    SVY       +P+ PP++ +    S     E++I  +EDE+
Sbjct: 138 PASERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEKDIQKIEDEI 192


>At1g50400.1 68414.m05649 porin family protein low similarity to
           haymaker protein [Mus musculus] GI:17834089,
           mitochondrial outer membrane protein MOM35 [Mus
           musculus] GI:6650562; contains Pfam profile PF01459:
           Eukaryotic porin
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 127 AIKSTLTNGYSLNHNKKLNEQKFLN*TI 44
           A+K  L  G+ L++NK LN++ FL+ +I
Sbjct: 44  ALKPELFEGFRLDYNKSLNQKFFLSHSI 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,944,389
Number of Sequences: 28952
Number of extensions: 276207
Number of successful extensions: 844
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)