Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0974
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361...    29   3.2  
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360...    29   3.2  
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217...    28   5.6  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    28   7.4  
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318     27   9.8  

>09_02_0052 -
           3616013-3616033,3616116-3616514,3617925-3618094,
           3619691-3620732
          Length = 543

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 524 MSRRKRTPILCRVYWLTQNV 583
           +SRR++TP LCR+  L+QN+
Sbjct: 327 VSRRRQTPELCRILGLSQNM 346


>09_02_0051 -
           3606453-3606473,3606562-3606957,3608250-3608419,
           3609654-3610707
          Length = 546

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 524 MSRRKRTPILCRVYWLTQNV 583
           +SRR++TP LCR+  L+QN+
Sbjct: 331 VSRRRQTPELCRILGLSQNM 350


>07_01_0303 -
           2171796-2172611,2173133-2174062,2174659-2175132,
           2175569-2175609,2176298-2176337
          Length = 766

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 229 CCQWQKRQQPSKYYILYRWIVFIAVLAINIASFACQRI 342
           C  W  + + +   + Y  + F+A+L+IN+ S AC R+
Sbjct: 519 CRLWNSKGKVTMRSLFY--VTFLAILSINVHSSACLRL 554


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 170 CGKRVAELLAWIIGLLTAXAVASGRRGNNLPNTIFCTGG*YLL 298
           CGKR+   L  I G L+   +  G    NL ++   T G YL+
Sbjct: 322 CGKRIHSGLELIRGELSKLGIVDGVTEANLEHSTIWTAGLYLM 364


>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
          Length = 878

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 431 FKQLSHLXVVYYYKNDRNLNLTYDEDDVPVPMSRRKRTP 547
           FK+L+   +V  YKN ++  +  D D   VP +   RTP
Sbjct: 590 FKKLTVDSIVTDYKNSKSRVILLDYDGTLVPQTTINRTP 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,825
Number of Sequences: 37544
Number of extensions: 316048
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)