Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0974
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             32   0.35 
SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)             31   0.62 
SB_24436| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_53540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 548 ILCRVYWLTQNVATDLAFVISLVYWALVYDP 640
           + C+V W+  N+A ++A +++ +YW   Y P
Sbjct: 377 LACKVSWVVFNIAANVAPLVTFMYWGFNYVP 407


>SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)
          Length = 216

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 385 KWFIYLTNWGFMLI 426
           KWFIYLTNW ++++
Sbjct: 35  KWFIYLTNWSYLIL 48


>SB_24436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 557 RVYWLTQNVATDLAFVISLVYWALVY 634
           +  W+  ++A D+A V+++ YW L+Y
Sbjct: 120 KALWVLYSMAADMAVVVTVSYWTLLY 145


>SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 560 VYWLTQNVATDLAFVISLVYWALVYDPEIH 649
           V W+   ++ D + V+ + Y+++ YDP+++
Sbjct: 208 VLWVLHTISIDSSLVLVVAYFSMWYDPDVN 237


>SB_53540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 613 KRDDEGEVCSDVLCEP 566
           +R++ G+VCS V CEP
Sbjct: 219 RREETGQVCSQVTCEP 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,462
Number of Sequences: 59808
Number of extensions: 366994
Number of successful extensions: 989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)